Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00032 ATGGCTTCCAAGCTATGTAATTTTCTCCCAACAATGGTTCTCATTCTCCTCTTACCCTTATTTGCCTCAATAGCTTTCTCAGATAGTACTCTTCCCACCACTCCTGTGTCTCCTGGAACCGTATGCAAATCAACTCCAGACCCATCCTATTGCAAATCTGTTCTCCCTCACCAAAATGGAAACGTCTACGATTATGGTCGATTCTCTGTCAAAAAGTCTTTATCACAAGCCCGTAAATTCATGAACTTAGTTGATAAATATCTCAACGGTCGTTCTACTCTTTCCGCCACCGCCGTCCGTGCACTCCAAGATTGCCGAACTCTTGCGGAGCTGAACTTTGATTTCCTTTCGAGTTCTTTCCAGACAGTGAACAAGACAACGAGGTTTCTACCTAGTTTGCAAGCTGATGATATACAAACATTGCTCAGTGCCATTTTAACCAACCAACAAACCTGCTTGGATGGTCTCAAAGACACTGCTTCAGCTGGGAGCCTGAGAAATGGACTCTCTGTTCCACTTTCTGATGACAACAAGCTCTACAGTGTCTCTCTTGCTTTGTTTACAAAAGGGTGGGTTCCCAGAAACAAAAACAAAGGCAGTGCATTGCACCCAACCAAGAAACAACTTGGATTTCGAAATGGGCGTTTGCCCCTTAAGATGTCAACCAGAACCCGCGCCATCTACGAGTCGGTGACCAGTAGGAAGCTCCTTCAGACCAATCTCGATGACCAGGTTGTCGTGAGAGACATTGTGACAGTGAGCAAAGACGGAAGTGGAAACTTCACCACAATTAACGACGCCATTGCCGCTGCTCCAAACAAATCTGTCTCTACGGACGGGTACTTTATGATCTATGTCACCGCCGGTGTTTACGACGAAAATGTGTCCATTGATAAGAAAAAGACGTATTTGATGATGATAGGAGATGGTATCAACAAGACAATCATCACAGGCAATCGTAGCGTCATCGATGGGTGGACCACCTTCAGCTCCGCAACCTTTGCTGTGGTCGGGCAAGGATTCGTGGGTGTAAATATAACATTCCGTAACACCGCCGGGGCTGAGAAGCATCAAGCAGTAGCTGTTCGAAATGGAGCAGATTTGTCCACGTTTTACAGTTGCAGCTTCGAGGGGTACCAAGACACATTATACGCACATTCCCTAAGACAATTCTATAGCGAATGCGACATCTACGGTACCGTAGATTTCATATTCGGAAACGCCAAGGTTGTGCTCCAAAATTGCAACCTGTATCCTCGTCTCCCAATGAGTGGGCAATTCAACGCCATCACTGCACAAGGTCGAACAGACCCGAACCAAGACACAGGTATTTCAATCCATCACTGTACCATTACAGCCGCCGATGATTTGGCTGCAAGTAATGGTTCGGCTGCAACATTTCTTGGAAGGCCATGGAAGGAGTATTCTAGGACGGTTTATATGCAAACCACTATGGACAATGTGGTTGATCCTGCTGGGTGGCGTGCATGGGATGGTGATTTTGCATTGAGCACATTGTATTACGCTGAGTTCAACAACACTGGATCTGGATCCAGCACCGCCAGTAGAGTGACGTGGCCAGGTTACCATGTGATTAATGCCACGGATGCTGCTAACTTTACGGTGTCCAACTTCTTGCTTGGAGATGATTGGTTGCCCCAGACAGGAGTTACTTACACCAATACCTTAATTTAG 1695 0.4631 MASKLCNFLPTMVLILLLPLFASIAFSDSTLPTTPVSPGTVCKSTPDPSYCKSVLPHQNGNVYDYGRFSVKKSLSQARKFMNLVDKYLNGRSTLSATAVRALQDCRTLAELNFDFLSSSFQTVNKTTRFLPSLQADDIQTLLSAILTNQQTCLDGLKDTASAGSLRNGLSVPLSDDNKLYSVSLALFTKGWVPRNKNKGSALHPTKKQLGFRNGRLPLKMSTRTRAIYESVTSRKLLQTNLDDQVVVRDIVTVSKDGSGNFTTINDAIAAAPNKSVSTDGYFMIYVTAGVYDENVSIDKKKTYLMMIGDGINKTIITGNRSVIDGWTTFSSATFAVVGQGFVGVNITFRNTAGAEKHQAVAVRNGADLSTFYSCSFEGYQDTLYAHSLRQFYSECDIYGTVDFIFGNAKVVLQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGISIHHCTITAADDLAASNGSAATFLGRPWKEYSRTVYMQTTMDNVVDPAGWRAWDGDFALSTLYYAEFNNTGSGSSTASRVTWPGYHVINATDAANFTVSNFLLGDDWLPQTGVTYTNTLI 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00032 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Gabi2554g00032 564 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Gabi2554g00032 564 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Gabi2554g00032 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Gabi2554g00032 564 CDD PMEI-like_3 40 191 - -
Gabi2554g00032 564 SMART PMEI_2 33 186 IPR006501 GO:0004857
Gabi2554g00032 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Gabi2554g00032 564 Gene3D - 245 563 IPR012334 -
Gabi2554g00032 564 SUPERFAMILY Pectin lyase-like 247 561 IPR011050 -
Gabi2554g00032 564 FunFam Pectinesterase 39 189 - -
Gabi2554g00032 564 PANTHER PECTINESTERASE 24 553 - -
Gabi2554g00032 564 NCBIfam pectinesterase inhibitor domain 14 161 IPR006501 GO:0004857
Gabi2554g00032 564 FunFam Pectinesterase 244 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00032 Gabi-Chr2554 157894 160253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00032 9 564 Carbohydrate Esterase AT4G02330 63.222 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00032 K01051 - gmx:100800971 961.444