Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00031 ATGACCAACTTGTACACGTGTCTGGATGGTTTTGCTTACAGTAAAGGAAATGTGAGAAGCAGAATCGAAAACAAGTTATTTGAGATCTCCCATCACGTTAGTAACTCACTCGCCATGCTGAAGAAAGTCCCTGGAGTGAAGAAACCATCAAAGTCTGAGGCATTCCCCGAATATGGAAAGATGAAAGACCGTTTCCCATTGTGGGTTACCTCCAAAGAGAGAAAGCTACTACAAGCTTCTGTTAATGAGACCAAGTTTGATCTTGTTGTAGCCAAAGATGGCTCTGGCAACTTCACCACTATAGGGGAAGCACTGTCTTCAGCTCCAAACTCTAGCACAACTAGGCACGTTTACTACCTTAACCTTATCCCAGGAGCATACTTTGAGAATGTGGAGGTGATAAAGAAGAAGACCAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACTGTTGTGAAGGCTAATAGAAATGTTGTGGATGGATGGACAACTTTCCAATCAGCTACTTTTGCTGTGGTAGGAGACAGGTTCATAGCGAAGGGTATAACCTTTGAGAACTCAGCAGGGCCAAGCAAACACCAAGCTGTGGCGGTGAGGAGTGGTGCTGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCATACCAAGACACTCTCTATGTCCACTCTCTCCGTCAATTCTACCGTGAATGTGACATTTATGGAACCATAGACTTCATCTTTGGCAATGCTGCAGTGGTCTTTCAAAACTGCAACTTATACGCACGCAAGCCTAATGAAAACCAAAAGAACTTGTTCACTGCACAAGGCAGAGAAGACCCTAACCAAAACACTGGAATTTCTATCTTGAATTGCAAGGTTGCTGCTGCAGCTGATTTAATCCCAGTCAAATCTACGTTCAAGACTTACCTTGGTCGACCTTGGAAAAAGTATTCAAGAACTGTTTATCTCAAATCTTACATGGAAGATCTGATAGACCCTGCAGGGTGGTTGGAATGGAATGGAACGTTTGCATTGGATACACTTTATTATGGAGAGTACATGAATACGGGTCCTGGTTCGAATACAAGTGCCAGAGTAACGTGGCCAGGTTATAGGGTCATCAAAAATTCCACTGAGGCTAGCCAATTCACTGTTGGACAGTTCATACAAGGTAATGACTGGTTGAACTCCACCAACATTCCATTTTTCTCTGATCTTAGTTGA 1206 0.4303 MTNLYTCLDGFAYSKGNVRSRIENKLFEISHHVSNSLAMLKKVPGVKKPSKSEAFPEYGKMKDRFPLWVTSKERKLLQASVNETKFDLVVAKDGSGNFTTIGEALSSAPNSSTTRHVYYLNLIPGAYFENVEVIKKKTNLMLVGDGIGKTVVKANRNVVDGWTTFQSATFAVVGDRFIAKGITFENSAGPSKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKTYLGRPWKKYSRTVYLKSYMEDLIDPAGWLEWNGTFALDTLYYGEYMNTGPGSNTSARVTWPGYRVIKNSTEASQFTVGQFIQGNDWLNSTNIPFFSDLS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00031 401 Gene3D - 81 400 IPR012334 -
Gabi2554g00031 401 ProSitePatterns Pectinesterase signature 2. 233 242 IPR033131 -
Gabi2554g00031 401 PANTHER PECTINESTERASE 1 390 - -
Gabi2554g00031 401 Pfam Pectinesterase 87 386 IPR000070 GO:0030599|GO:0042545
Gabi2554g00031 401 FunFam Pectinesterase 81 400 - -
Gabi2554g00031 401 SUPERFAMILY Pectin lyase-like 85 398 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00031 Gabi-Chr2554 139403 143985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00031 1 400 Carbohydrate Esterase AT4G02320 59.179 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00031 K01051 - gmx:100802881 696.041