Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00029 ATGACCAACTTGTACACGTGTCTGGATGGTTTTGCTTACAGTAAAGGAAATGTGAGAAGCAGAATCGAAAACAAGTTATTTGAGATCTCCCATCACGTTAGTAACTCACTCGCCATGCTGAAGAAAGTCCCTGGAGTGAAGAAACCATCAAAGTCTGAGGCATTCCCCGAATATGGAAAGATGAAAGACCGTTTCCCATTGTGGGTTACCTCCAAAGAGAGAAAGCTACTACAAGCTTCTGTTAATGAGACCAAGTTTGATCTTGTTGTAGCCAAAGATGGCTCTGGCAACTTCACCACTATAGGGGAAGCACTGTCTTCAGCTCCAAACTCTAGCACAACTAGGCACGGTAGGTTTGTGATACACATAAAAGCAGGAGCATACTTTGAGAATGTGGAGGTGATAAAGAAGAAGACCAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACTGTTGTGAAGGCTAATAGAAATGTTGTGGATGGATGGACAACTTTCCAATCAGCTACTTTTGCTGTGGTAGGAGACAGGTTCATAGCGAAGGGTATAACCTTTGAGAACTCAGCAGGGCCAAGCAAACACCAAGCTGTGGCGGTGAGGAGTGGTGCTGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCATACCAAGACACTCTCTATGTCCACTCTCTCCGTCAATTCTACCGTGAATGTGACATTTATGGAACCATAGACTTCATCTTTGGCAATGCTGCAGTGGTCTTTCAAAACTGCAACTTATACGCACGCAAGCCTAATGAAAACCAAAAGAACTTGTTCACTGCACAAGGCAGAGAAGACCCTAACCAAAACACTGGAATTTCTATCTTGAATTGCAAGGTTGCTGCTGCAGCTGATTTAATCCCAGTCAAATCTACGTTCAAGACTTACCTTGGTCGACCTTGGAAAAAGTATTCAAGAACTGTTTATCTCAAATCTTACATGGAAGATCTGATAGACCCTGCAGGGTGGTTGGAATGGAATGGAACGTTTGCATTGGATACACTTTATTATGGAGAGTACATGAATACGGGTCCTGGTTCGAATACAAGTGCCAGAGTAACGTGGCCAGGTTATAGGGTCATCAAAAATTCCACTGAGGCTAGCCAATTCACTGTTGGACAGTTCATACAAGGTAATGACTGGTTGAACTCCACCAACATTCCATTTTTCTCTGATCTTAGTTGA 1209 0.4301 MTNLYTCLDGFAYSKGNVRSRIENKLFEISHHVSNSLAMLKKVPGVKKPSKSEAFPEYGKMKDRFPLWVTSKERKLLQASVNETKFDLVVAKDGSGNFTTIGEALSSAPNSSTTRHGRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGKTVVKANRNVVDGWTTFQSATFAVVGDRFIAKGITFENSAGPSKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKTYLGRPWKKYSRTVYLKSYMEDLIDPAGWLEWNGTFALDTLYYGEYMNTGPGSNTSARVTWPGYRVIKNSTEASQFTVGQFIQGNDWLNSTNIPFFSDLS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00029 402 Pfam Pectinesterase 87 387 IPR000070 GO:0030599|GO:0042545
Gabi2554g00029 402 ProSitePatterns Pectinesterase signature 2. 234 243 IPR033131 -
Gabi2554g00029 402 PANTHER PECTINESTERASE 1 391 - -
Gabi2554g00029 402 FunFam Pectinesterase 81 401 - -
Gabi2554g00029 402 Gene3D - 81 401 IPR012334 -
Gabi2554g00029 402 SUPERFAMILY Pectin lyase-like 85 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00029 Gabi-Chr2554 139403 143985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00029 1 401 Carbohydrate Esterase AT4G02320 59.759 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00029 K01051 - gmx:100802881 705.286