Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00028 ATGACCAACTTGTACACGTGTCTGGATGGTTTTGCTTACAGTAAAGGAAATGTGAGAAGCAGAATCGAAAACAAGTTATTTGAGATCTCCCATCACGTTAGTAACTCACTCGCCATGCTGAAGAAAGTCCCTGGAGTGAAGAAACCATCAAAGTCTGAGGCATTCCCCGAATATGGAAAGATGAAAGACCGTTTCCCATTGTGGGTTACCTCCAAAGAGAGAAAGCTACTACAAGCTTCTGTTAATGAGACCAAGTTTGATCTTGTTGTAGCCAAAGATGGCTCTGGCAACTTCACCACTATAGGGGAAGCACTGTCTTCAGCTCCAAACTCTAGCACAACTAGGCACGTAAATATGGAGTTTGTGATACACATAAAAGCAGGAGCATACTTTGAGAATGTGGAGGTGATAAAGAAGAAGACCAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACTGTTGTGAAGGCTAATAGAAATGTTGTGGATGGATGGACAACTTTCCAATCAGCTACTTTTGCTGTGGTAGGAGACAGGTTCATAGCGAAGGGTATAACCTTTGAGAACTCAGCAGGGCCAAGCAAACACCAAGCTGTGGCGGTGAGGAGTGGTGCTGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCATACCAAGACACTCTCTATGTCCACTCTCTCCGTCAATTCTACCGTGAATGTGACATTTATGGAACCATAGACTTCATCTTTGGCAATGCTGCAGTGGTCTTTCAAAACTGCAACTTATACGCACGCAAGCCTAATGAAAACCAAAAGAACTTGTTCACTGCACAAGGCAGAGAAGACCCTAACCAAAACACTGGAATTTCTATCTTGAATTGCAAGGTTGCTGCTGCAGCTGATTTAATCCCAGTCAAATCTACGTTCAAGACTTACCTTGGTCGACCTTGGAAAAAGTATTCAAGAACTGTTTATCTCAAATCTTACATGGAAGATCTGATAGACCCTGCAGGGTGGTTGGAATGGAATGGAACGTTTGCATTGGATACACTTTATTATGGAGAGTACATGAATACGGGTCCTGGTTCGAATACAAGTGCCAGAGTAACGTGGCCAGGTTATAGGGTCATCAAAAATTCCACTGAGGCTAGCCAATTCACTGTTGGACAGTTCATACAAGGTAATGACTGGTTGAACTCCACCAACATTCCATTTTTCTCTGATCTTAGTTGA 1215 0.428 MTNLYTCLDGFAYSKGNVRSRIENKLFEISHHVSNSLAMLKKVPGVKKPSKSEAFPEYGKMKDRFPLWVTSKERKLLQASVNETKFDLVVAKDGSGNFTTIGEALSSAPNSSTTRHVNMEFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGKTVVKANRNVVDGWTTFQSATFAVVGDRFIAKGITFENSAGPSKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKTYLGRPWKKYSRTVYLKSYMEDLIDPAGWLEWNGTFALDTLYYGEYMNTGPGSNTSARVTWPGYRVIKNSTEASQFTVGQFIQGNDWLNSTNIPFFSDLS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00028 404 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
Gabi2554g00028 404 Pfam Pectinesterase 87 389 IPR000070 GO:0030599|GO:0042545
Gabi2554g00028 404 SUPERFAMILY Pectin lyase-like 85 401 IPR011050 -
Gabi2554g00028 404 Gene3D - 81 403 IPR012334 -
Gabi2554g00028 404 PANTHER PECTINESTERASE 1 393 - -
Gabi2554g00028 404 FunFam Pectinesterase 81 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00028 Gabi-Chr2554 139403 143985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00028 1 403 Carbohydrate Esterase AT4G02320 59.472 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00028 K01051 - gmx:100802881 704.516