Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00027 ATGACCAACTTGTACACGTGTCTGGATGGTTTTGCTTACAGTAAAGGAAATGTGAGAAGCAGAATCGAAAACAAGTTATTTGAGATCTCCCATCACGTTAGTAACTCACTCGCCATGCTGAAGAAAGTCCCTGGAGTGAAGAAACCATCAAAGTCTGAGGCATTCCCCGAATATGGAAAGATGAAAGACCGTTTCCCATTGTGGGTTACCTCCAAAGAGAGAAAGCTACTACAAGCTTCTGTTAATGAGACCAAGTTTGATCTTGTTGTAGCCAAAGATGGCTCTGGCAACTTCACCACTATAGGGGAAGCACTGTCTTCAGCTCCAAACTCTAGCACAACTAGGCACCATGCATTAATTAATAGTTACTTGTTAATTTTGTGTGATTGTAGGTTTGTGATACACATAAAAGCAGGAGCATACTTTGAGAATGTGGAGGTGATAAAGAAGAAGACCAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACTGTTGTGAAGGCTAATAGAAATGTTGTGGATGGATGGACAACTTTCCAATCAGCTACTTTTGCTGTGGTAGGAGACAGGTTCATAGCGAAGGGTATAACCTTTGAGAACTCAGCAGGGCCAAGCAAACACCAAGCTGTGGCGGTGAGGAGTGGTGCTGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCATACCAAGACACTCTCTATGTCCACTCTCTCCGTCAATTCTACCGTGAATGTGACATTTATGGAACCATAGACTTCATCTTTGGCAATGCTGCAGTGGTCTTTCAAAACTGCAACTTATACGCACGCAAGCCTAATGAAAACCAAAAGAACTTGTTCACTGCACAAGGCAGAGAAGACCCTAACCAAAACACTGGAATTTCTATCTTGAATTGCAAGGTTGCTGCTGCAGCTGATTTAATCCCAGTCAAATCTACGTTCAAGACTTACCTTGGTCGACCTTGGAAAAAGTATTCAAGAACTGTTTATCTCAAATCTTACATGGAAGATCTGATAGACCCTGCAGGGTGGTTGGAATGGAATGGAACGTTTGCATTGGATACACTTTATTATGGAGAGTACATGAATACGGGTCCTGGTTCGAATACAAGTGCCAGAGTAACGTGGCCAGGTTATAGGGTCATCAAAAATTCCACTGAGGCTAGCCAATTCACTGTTGGACAGTTCATACAAGGTAATGACTGGTTGAACTCCACCAACATTCCATTTTTCTCTGATCTTAGTTGA 1248 0.4231 MTNLYTCLDGFAYSKGNVRSRIENKLFEISHHVSNSLAMLKKVPGVKKPSKSEAFPEYGKMKDRFPLWVTSKERKLLQASVNETKFDLVVAKDGSGNFTTIGEALSSAPNSSTTRHHALINSYLLILCDCRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGKTVVKANRNVVDGWTTFQSATFAVVGDRFIAKGITFENSAGPSKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKTYLGRPWKKYSRTVYLKSYMEDLIDPAGWLEWNGTFALDTLYYGEYMNTGPGSNTSARVTWPGYRVIKNSTEASQFTVGQFIQGNDWLNSTNIPFFSDLS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00027 415 SUPERFAMILY Pectin lyase-like 85 412 IPR011050 -
Gabi2554g00027 415 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Gabi2554g00027 415 FunFam Pectinesterase 81 414 - -
Gabi2554g00027 415 Gene3D - 81 414 IPR012334 -
Gabi2554g00027 415 PANTHER PECTINESTERASE 1 404 - -
Gabi2554g00027 415 Pfam Pectinesterase 87 400 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00027 Gabi-Chr2554 139403 143985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00027 1 414 Carbohydrate Esterase AT4G02320 57.944 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00027 K01051 - gmx:100802881 700.279