Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00024 ATGACCAACTTGTACACGTGTCTGGATGGTTTTGCTTACAGTAAAGGAAATGTGAGAAGCAGAATCGAAAACAAGTTATTTGAGATCTCCCATCACGTTAGTAACTCACTCGCCATGCTGAAGAAAGTCCCTGGAGTGAAGAAACCATCAAAGTCTGAGGCATTCCCCGAATATGGAAAGATGAAAGACCGTTTCCCATTGTGGGTTACCTCCAAAGAGAGAAAGCTACTACAAGCTTCTGTTAATGAGACCAAGTTTGATCTTGTTGTAGCCAAAGATGGCTCTGGCAACTTCACCACTATAGGGGAAGCACTGTCTTCACATGCATTAATTAATAGTTACTTGTTAATTTTGTGTGATTGTAGGTTTGTGATACACATAAAAGCAGGAGCATACTTTGAGAATGTGGAGGTGATAAAGAAGAAGACCAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACTGTTGTGAAGGCTAATAGAAATGTTGTGGATGGATGGACAACTTTCCAATCAGCTACTTTTGCTGTGGTAGGAGACAGGTTCATAGCGAAGGGTATAACCTTTGAGAACTCAGCAGGGCCAAGCAAACACCAAGCTGTGGCGGTGAGGAGTGGTGCTGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCATACCAAGACACTCTCTATGTCCACTCTCTCCGTCAATTCTACCGTGAATGTGACATTTATGGAACCATAGACTTCATCTTTGGCAATGCTGCAGTGGTCTTTCAAAACTGCAACTTATACGCACGCAAGCCTAATGAAAACCAAAAGAACTTGTTCACTGCACAAGGCAGAGAAGACCCTAACCAAAACACTGGAATTTCTATCTTGAATTGCAAGGTTGCTGCTGCAGCTGATTTAATCCCAGTCAAATCTACGTTCAAGACTTACCTTGGTCGACCTTGGAAAAAGTATTCAAGAACTGTTTATCTCAAATCTTACATGGAAGATCTGATAGACCCTGCAGGGTGGTTGGAATGGAATGGAACGTTTGCATTGGATACACTTTATTATGGAGAGTACATGAATACGGGTCCTGGTTCGAATACAAGTGCCAGAGTAACGTGGCCAGGTTATAGGGTCATCAAAAATTCCACTGAGGCTAGCCAATTCACTGTTGGACAGTTCATACAAGGTAATGACTGGTTGAACTCCACCAACATTCCATTTTTCTCTGATCTTAGTTGA 1221 0.421 MTNLYTCLDGFAYSKGNVRSRIENKLFEISHHVSNSLAMLKKVPGVKKPSKSEAFPEYGKMKDRFPLWVTSKERKLLQASVNETKFDLVVAKDGSGNFTTIGEALSSHALINSYLLILCDCRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGKTVVKANRNVVDGWTTFQSATFAVVGDRFIAKGITFENSAGPSKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKTYLGRPWKKYSRTVYLKSYMEDLIDPAGWLEWNGTFALDTLYYGEYMNTGPGSNTSARVTWPGYRVIKNSTEASQFTVGQFIQGNDWLNSTNIPFFSDLS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00024 406 Gene3D - 81 405 IPR012334 -
Gabi2554g00024 406 PANTHER PECTINESTERASE 1 395 - -
Gabi2554g00024 406 FunFam Pectinesterase 81 405 - -
Gabi2554g00024 406 Pfam Pectinesterase 87 391 IPR000070 GO:0030599|GO:0042545
Gabi2554g00024 406 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Gabi2554g00024 406 SUPERFAMILY Pectin lyase-like 85 403 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00024 Gabi-Chr2554 139403 143985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00024 1 405 Carbohydrate Esterase AT4G02320 58.473 5.47e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00024 K01051 - gmx:100802881 687.952