Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00017 ATGTGTGGTGGTTCTATCATCGCTGAGTTTATCCCTCACCGTCGTTCTCGCCCCCTCACCACCTCCGAACTGTGGCCTAACACGTTTGGCAATCAGAATGAACCGCAGTTCGTTAATTCTCATCCACAGCATCAACAATTAGTCCCTCTCAAGAGATCTCACCCTTCTCAAGTGAACGAGCAAGTTGACAACAAGACAGGGAAGAGGCAGAGGAAAAACCTCTACAGAGGGATTAGGCAGAGGCCATGGGGTAAATGGGCGGCGGAGATTCGAGATCCGAGGAAAGGTGTTCGTGTCTGGTTGGGAACATTCAACACAGCTGAAGAAGCTGCTAGAGCTTATGACAGAGAAGCTCGAAAAATCCGTGGCAAGAAAGCCAAAGTGAATTTCCCTAACGAAGATGATAAGTACTCCGTTGAAGTTAGTGTTAATCCAGCACAACAACAATATGATTATGTCCCCAAAAGTTTGAATTTGGAGTTTGGTTATGATCTGAATCAAGTAGGGGCGTTTCCTTCTCATGCTGCTAATAGCACAGAACCAGTTTTTGATGAAAGTTGTAGATATGGATCGGGGTCGGAGGGTGCTTACTCGAATAATCTTGAAGAGGAGAAGGTGAATGAGGAAGGTGAAAAAGTGAAGGAGTTAGTGATTGTTGGAAGTGAAGAGGAAAAGAACCAAGTGGAGAAACTTTCGGAGGAGCTGATGGCGTACGAGAATTACATGAGGTTTTATCAGATTCCCTACTATGATGGCCAATCAGTTGCACTTGCACCCAATAGCGCTCAGGAAAGTGTTGTTGGGGATCTTTGGAGCTTCGATGTTGATGCCATTCCTGCTTCTGTCACTTCTTCATCAACCCTGTGA 867 0.4567 MCGGSIIAEFIPHRRSRPLTTSELWPNTFGNQNEPQFVNSHPQHQQLVPLKRSHPSQVNEQVDNKTGKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDKYSVEVSVNPAQQQYDYVPKSLNLEFGYDLNQVGAFPSHAANSTEPVFDESCRYGSGSEGAYSNNLEEEKVNEEGEKVKELVIVGSEEEKNQVEKLSEELMAYENYMRFYQIPYYDGQSVALAPNSAQESVVGDLWSFDVDAIPASVTSSSTL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00017 288 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Gabi2554g00017 288 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Gabi2554g00017 288 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Gabi2554g00017 288 PANTHER DNA-BINDING DOMAIN 45 215 IPR044808 GO:0003700|GO:0009873
Gabi2554g00017 288 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Gabi2554g00017 288 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Gabi2554g00017 288 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Gabi2554g00017 288 Coils Coil 221 241 - -
Gabi2554g00017 288 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Gabi2554g00017 288 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Gabi2554g00017 288 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00017 Gabi-Chr2554 93510 94475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00017 201 273 AP2-EREBP Transcription Factor Family AT2G47520 43.836 8.55e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2554g00017 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00017 K09286 - gmx:100780763 340.887