Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00011 ATGTCCTCCGATACCCACGCCGCCCCTAATATCAATCCCAAGGGTCTCTTCTGCAATGCTGCCGCCGGTGCAGCCGCCGGAGTTATTGCTGCTGCGTTTGTGTGTCCTTTAGATGTCATCAAAACTAGGCTTCAAGTTCATGGGGTACCGCAGCTCGCTAATGGAAATGTTAAAGCACGCAGTATAATAGTTGCTAGTCTGGAACAAATATTACACAAGGAGGGGTTACGCGGCATGTACCGTGGGCTGGCTCCCACTGCGCTGGCTTTACTTCCAAACTGGGCGGTTTATTTTACCATGTATGAGCAGCTCAAGAGCCTTCTTCATTCTGATGATGAAAGTCATCATCTTTCAATTGGAGCTAATATGATAGCTGCTTCTGGTGCTGGGGCTGCAACTACCCTGTTTACAAATCCACTTTGGGTTGTGAAGACTAGACTCCAAACCCAGGGAATGAGACCTGGTGTTGTGCCATATAGGAGCACGCTATCTGCATTGAGGAGAATTGCCCATGAGGAGGGCATTCGGGGGCTGTACAGTGGCCTTGTACCTGCCCTGGCTGGTATCAGTCATGTTGCCATCCAATTTCCAACGTATGAGACAATAAAATTTTATTTGGCTAATCAAGATGACGCAGCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCCTCATCAGTCTCCAAAATTTTTGCATCCACATTGACATATCCTCATGAGGTTGTACGTTCCAGACTGCAAGAACAAGGGCTCCACTCAGAGAAAAGGTACTCTGGTGTGATTGACTGTATTAGAAAGGTTTTTCAACAAGAAGGTGTACCTGGTTTTTACCGAGGGTGTGCCACGAACCTTCTGAGGACAACACCAGCTGCTGTGATCACATTCACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCACATTTTCCTTCTGATCCACATCCTCAAATTTTGTGA 960 0.4656 MSSDTHAAPNINPKGLFCNAAAGAAAGVIAAAFVCPLDVIKTRLQVHGVPQLANGNVKARSIIVASLEQILHKEGLRGMYRGLAPTALALLPNWAVYFTMYEQLKSLLHSDDESHHLSIGANMIAASGAGAATTLFTNPLWVVKTRLQTQGMRPGVVPYRSTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDAAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGLHSEKRYSGVIDCIRKVFQQEGVPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSHFPSDPHPQIL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00011 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 305 IPR018108 -
Gabi2554g00011 319 Gene3D Mitochondrial carrier domain 111 309 IPR023395 -
Gabi2554g00011 319 Gene3D Mitochondrial carrier domain 2 110 IPR023395 -
Gabi2554g00011 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 107 IPR018108 -
Gabi2554g00011 319 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 17 308 IPR044712 GO:0006862|GO:0055085
Gabi2554g00011 319 PRINTS Mitochondrial carrier protein signature 132 150 IPR002067 GO:0055085
Gabi2554g00011 319 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Gabi2554g00011 319 PRINTS Mitochondrial carrier protein signature 226 248 IPR002067 GO:0055085
Gabi2554g00011 319 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Gabi2554g00011 319 PRINTS Mitochondrial carrier protein signature 82 102 IPR002067 GO:0055085
Gabi2554g00011 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 205 IPR018108 -
Gabi2554g00011 319 Pfam Mitochondrial carrier protein 14 110 IPR018108 -
Gabi2554g00011 319 Pfam Mitochondrial carrier protein 223 308 IPR018108 -
Gabi2554g00011 319 Pfam Mitochondrial carrier protein 117 208 IPR018108 -
Gabi2554g00011 319 FunFam Mitochondrial nicotinamide adenine dinucleotide transporter 1 114 309 - -
Gabi2554g00011 319 SUPERFAMILY Mitochondrial carrier 15 301 IPR023395 -
Gabi2554g00011 319 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 2 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00011 Gabi-Chr2554 47273 52006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00011 1 313 Chloroplast and Mitochondria Gene Families AT2G47490 75.399 6.04e-163 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00011 K15115 - gmx:100500213 558.525