Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00008 ATGGCGACGAGAAATCGAACTTTAGAGTTCAGGAAGCACAGAGACGCCGTGAAGAGCGTACGTGCTCCTCTGTCTTCGTCAGCATCTGCTTCCGGCGGTGGTCCTGTCATTGAAATGGTTAGCACTTCGCTTCTTCGTTCCAATCGATCTTCCTATACCCCTCTAAGCACCGAGGATCCAGGTCCAGCAACCTCAAGGGATGCATTTACTGTGGGCTTGCCTCCTTCTTGGGTGGATGATTCCGAAGAAATAGCTACGAATATACAACGTGCTCGAGTTAAAATTGCTGAGTTAATAAAAGCTCATTCAAAGGCTTTAATGCCCTCCTTTGGTGATGGCAAAGATGATCAGCGTCAGATTGAGACTCTCACCCAGGAAATTACAGCTCTCCTCAGAAAGTCTGAAATGAGGCTAAAAAAACTTTCCACTGATAGTGGATCTTCTGAGGATTCTAATGTCAAAAAAAATGTGCAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCTATGGACCTCCGGCGAAAGCAGTCGGCATATTTGAAACGTTTGCAGCAGCAAAAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAATAAATTTGGTTTGCAGGATGATGGATTCAGTGATGTGGGTTTTAGTGAACAACAAATGTCAAAGCTAAAGAAAAGTGAGCAGTTATCAGAGGAAAGGGAAAGAGAGATTGAACAGGTCATGAAATCGGTAAACGAACTTGCTCAGATCATGAAGGATCTTTCTGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTGCTACATCGGTTGAGGAGGGTTTTAAGCAGTTACAAAAGGCTGAGAGAACGCAGAAACAAGGAGGGGTGATTACGTGTGCAACAGTGCTTGTTATAATGTGCTTTATCATGATAGTTCTCTTGATATTGAAGGAGATACTCTTTTAG 975 0.4359 MATRNRTLEFRKHRDAVKSVRAPLSSSASASGGGPVIEMVSTSLLRSNRSSYTPLSTEDPGPATSRDAFTVGLPPSWVDDSEEIATNIQRARVKIAELIKAHSKALMPSFGDGKDDQRQIETLTQEITALLRKSEMRLKKLSTDSGSSEDSNVKKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEGYDGVDLEMNFNGNKFGLQDDGFSDVGFSEQQMSKLKKSEQLSEEREREIEQVMKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGFKQLQKAERTQKQGGVITCATVLVIMCFIMIVLLILKEILF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00008 324 CDD SNARE_syntaxin16 232 289 - -
Gabi2554g00008 324 SMART tSNARE_6 223 290 IPR000727 -
Gabi2554g00008 324 FunFam Syntaxin-43 74 282 - -
Gabi2554g00008 324 Pfam SNARE domain 264 316 IPR000727 -
Gabi2554g00008 324 PANTHER SYNTAXIN 80 310 IPR045242 -
Gabi2554g00008 324 Coils Coil 224 244 - -
Gabi2554g00008 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Gabi2554g00008 324 SMART SynN_4 68 184 IPR006011 GO:0016020
Gabi2554g00008 324 Gene3D - 74 282 - -
Gabi2554g00008 324 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00008 Gabi-Chr2554 20389 26020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00008 1 324 SNARE and Associated Proteins AT4G02195 69.846 2.89e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00008 K08489 - gmx:100803629 499.975