Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00007 ATGGCGACGAGAAATCGAACTTTAGAGTTCAGGAAGCACAGAGACGCCGTGAAGAGCGTACGTGCTCCTCTGTCTTCGTCAGCATCTGCTTCCGGCGGTGGTCCTGTCATTGAAATGGTTAGCACTTCGCTTCTTCGTTCCAATCGATCTTCCTATACCCCTCTAAGCACCGAGGATCCAGGTCCAGCAACCTCAAGGGATGCATTTACTGTGGGCTTGCCTCCTTCTTGGGTGGATGATTCCGAAGAAATAGCTACGAATATACAACGTGCTCGAGTTAAAATTGCTGAGTTAATAAAAGCTCATTCAAAGGCTTTAATGCCCTCCTTTGGTGATGGCAAAGATGATCAGCGTCAGATTGAGACTCTCACCCAGGAAATTACAGCTCTCCTCAGAAAGTCTGAAATGAGGCTAAAAAAACTTTCCACTGATAGTGGATCTTCTGAGGATTCTAATGTCAAAAAAAATGTGCAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCTATGGACCTCCGGCGAAAGCAGTCGGCATATTTGAAACGTTTGCAGCAGCAAAAAGAGGTTGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAATAAATTTGGTTTGCAGGATGATGGATTCAGTGATGTGGGTTTTAGTGAACAACAAATGTCAAAGCTAAAGAAAAGTGAGCAGTTATCAGAGGAAAGGGAAAGAGAGATTGAACAGGTCATGAAATCGGTAAACGAACTTGCTCAGATCATGAAGGATCTTTCTGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTGCTACATCGGTTGAGGAGGGTTTTAAGCAGTTACAAAAGGCTGAGAGAACGCAGAAACAAGGAGGGGTGATTACGTGTGCAACAGTGCTTGTTATAATGTGCTTTATCATGATAGTTCTCTTGATATTGAAGGAGATACTCTTTTAG 978 0.4356 MATRNRTLEFRKHRDAVKSVRAPLSSSASASGGGPVIEMVSTSLLRSNRSSYTPLSTEDPGPATSRDAFTVGLPPSWVDDSEEIATNIQRARVKIAELIKAHSKALMPSFGDGKDDQRQIETLTQEITALLRKSEMRLKKLSTDSGSSEDSNVKKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEVGYDGVDLEMNFNGNKFGLQDDGFSDVGFSEQQMSKLKKSEQLSEEREREIEQVMKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGFKQLQKAERTQKQGGVITCATVLVIMCFIMIVLLILKEILF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00007 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Gabi2554g00007 325 SMART tSNARE_6 224 291 IPR000727 -
Gabi2554g00007 325 SUPERFAMILY t-snare proteins 73 284 IPR010989 GO:0016020|GO:0016192
Gabi2554g00007 325 Gene3D - 74 283 - -
Gabi2554g00007 325 Pfam SNARE domain 265 317 IPR000727 -
Gabi2554g00007 325 FunFam Syntaxin-43 74 283 - -
Gabi2554g00007 325 PANTHER SYNTAXIN 80 311 IPR045242 -
Gabi2554g00007 325 CDD SNARE_syntaxin16 233 290 - -
Gabi2554g00007 325 SMART SynN_4 68 184 IPR006011 GO:0016020
Gabi2554g00007 325 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00007 Gabi-Chr2554 20389 26023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00007 1 325 SNARE and Associated Proteins AT5G26980 70.213 1.03e-161 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00007 K08489 - gmx:100803629 495.352