Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00006 ATGGCGACGAGAAATCGAACTTTAGAGTTCAGGAAGCACAGAGACGCCGTGAAGAGCGTACGTGCTCCTCTGTCTTCGTCAGCATCTGCTTCCGGCGGTGGTCCTGTCATTGAAATGGTTAGCACTTCGCTTCTTCGTTCCAATCGATCTTCCTATACCCCTCTAAGCACCGAGGATCCAGGTCCAGCAACCTCAAGGGATGCATTTACTGTGGGCTTGCCTCCTTCTTGGGTGGATGATTCCGAAGAAATAGCTACGAATATACAACGTGCTCGAGTTAAAATTGCTGAGTTAATAAAAGCTCATTCAAAGGCTTTAATGCCCTCCTTTGGTGATGGCAAAGATGATCAGCGTCAGATTGAGACTCTCACCCAGGAAATTACAGCTCTCCTCAGAAAGTCTGAAATGAGGCTAAAAAAACTTTCCACTGATAGTGGATCTTCTGAGGATTCTAATGTCAAAAAAAATGTGCAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCTATGGACCTCCGGCGAAAGCAGTCGGCATATTTGAAACGTTTGCAGCAGCAAAAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAATAAATTTGGTTTGCAGGATGATGGATTCAGTGATGGTTTTAGTGAACAACAAATGTCAAAGCTAAAGAAAAGTGAGCAGTTATCAGAGGAAAGGGAAAGAGAGATTGAACAGGTCATGAAATCGGTAAACGAACTTGCTCAGATCATGAAGGATCTTTCTGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTGCTACATCGGTTGAGGAGGGTTTTAAGCAGTTACAAAAGGCTGAGAGAACGCAGAAACAAGGAGGGGTGATTACGTGTGCAACAGTGCTTGTTATAATGTGCTTTATCATGATAGTTCTCTTGATATTGAAGGAGATACTCTTTTAG 972 0.4352 MATRNRTLEFRKHRDAVKSVRAPLSSSASASGGGPVIEMVSTSLLRSNRSSYTPLSTEDPGPATSRDAFTVGLPPSWVDDSEEIATNIQRARVKIAELIKAHSKALMPSFGDGKDDQRQIETLTQEITALLRKSEMRLKKLSTDSGSSEDSNVKKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEGYDGVDLEMNFNGNKFGLQDDGFSDGFSEQQMSKLKKSEQLSEEREREIEQVMKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGFKQLQKAERTQKQGGVITCATVLVIMCFIMIVLLILKEILF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00006 323 Gene3D - 74 281 - -
Gabi2554g00006 323 Pfam SNARE domain 263 315 IPR000727 -
Gabi2554g00006 323 CDD SNARE_syntaxin16 231 288 - -
Gabi2554g00006 323 SUPERFAMILY t-snare proteins 73 282 IPR010989 GO:0016020|GO:0016192
Gabi2554g00006 323 PANTHER SYNTAXIN 80 309 IPR045242 -
Gabi2554g00006 323 SMART tSNARE_6 222 289 IPR000727 -
Gabi2554g00006 323 SMART SynN_4 68 184 IPR006011 GO:0016020
Gabi2554g00006 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Gabi2554g00006 323 FunFam Syntaxin-43 74 281 - -
Gabi2554g00006 323 Coils Coil 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00006 Gabi-Chr2554 20389 26025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00006 1 323 SNARE and Associated Proteins AT5G26980 70.642 3.81e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00006 K08489 - gmx:100803629 493.812