Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2553g00001 ATGGACCTTGTATTTTCACCGCAAGGAAAGTCAAATCCTCAGACTGAGGATAAGTTGTTCTTAAGGTGCTCAGATTCCTTCGGAATTCCAACGAGAGGAAAGCGCAGATATGGTTCAAAGAAGAGAAAGGTTCAAGAAGGCATTTTGGCAAGTTCAAAGAAGAGAAAGGTTCAAGAAGGCAGAGAAGACATTTTGGCAAGTTCAAAGAATACTAAACTTCCATCCAGGAAAGTACATGAGCCAAAGAAGAGTCTTTCTGGCTTGAACAAGAAAAGAAAATTGGAAGACAATATCAAGATTAACAATTTGGAAGAAGATGAGGAAGTTCTTTCTCTTTCAAGGACAAAGTCAAGAAGGAAAACTAGAAATATGGACAATATGAAGGATACTGAACAAAATTCCAAAATATGTCATCAGTGCATGAAAAAGGAAAGAGCATCATTTGTACCATGTACTAAATGTCAGAAAATGTACTGTCTGGGGTGCATCAACAACTGGTATCCCGATATGAAAATAGAAGATATAGCAGCGAGTTGCCCATTTTGCAGGAAAAATTGCAACTGCAATGTCTGCTTACGTTCAAAGGGAATGATTAAGACATCTAACGGGAAGTTCACAGATTGTGAAAAGGTTCGATATTTGCAATACATGATTAATTCACTTTTTCCGTTTGTGGAACAAATTCGTGAAGAACAAAGTCATGAGCATGAGATTGAAGCCAAGATACAAGGAAAATCATGTTCTGAGATTAAGATACCTCAAAGTACTTGTAGTGACGATGAACGTATCTATTGTGATCACTGTGCCACGTCTATTGTTGATCTTTATAGAAGCTGCCCCAAGTGTTCGTTTGAAATCTGTCTTACTTGCTGTCAAGAAATACGAAATGGAAGTATTTCACCCCAGCCTGAACTGAAGTTTGAATATGATAATAAGGGCATTGAGTACATGCATGGTGGTCATCCTCAACCAGTATATTGTGATTTAGGGACTTCAGAGGATACTATTGAGATATATACTGATTGGAATGCTAACAGTGATGGAAGTATTAGATGTGCTCCAAAAGAAATGGGGGGTTGTGGTGACTGTGTATTGGAGTTGAAGTGCATACTTCCAAATGGACTGATTTCTAATTTGGAAGACAAAACTCGTAACATGCTGAAGAATTTTTGCAAAATTGAGCACAAAACTCTTCAGAAAGAAGCAGTATTAAGCAGCAATTCTATGATAAGAGCTGCTTTTAGAGATGGCACGAATGATAATAACATATACTGTCCAGTGTCAAGTGACTTGTCAGAAGAAGGGCTATTTCTCTTCCAACAACATTGGATTAAAGGTGAACCAATCATAGTTCGGGATGTTCTTAAACAAGGGACAGGTCTGAGTTGGGAGCCAAAGGTCACTTGGCGAGCATTTTGTGAAAATTTGGTTTCAGGGAACAGCTCAAATGCGTCAAAAGTGAAGGCCATTGATTGCCTGTCTTGTTGTGAGGTAGAAATTCTCATTCGTGATTTCTTTAAAGGTTATACGAAAGGAAGAACATATATGAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGACAAGTTTGAAGATCTTTTGCCCCGGCATTGTGATGAATTTATCCGTTGTTTACCATTTCAAGAGTACAGTGATCCTCGAGCTGGAATCCTCAACCTTGCTGCAAAGTTACCAGCTCATGTCCTAAAGCCTGACATGGGTCCTAAAACCTATATTGCATATGGGACTAAAGAAGAACTTGGCAGAGGGGACTCTGTAACAAAGCTTCACTGTGATATGTCTGATGCGGTGAATATTTTGACTCATACAGCTGAGGTTACATTAACTGATGAACAACACCCTGTTATTTCAAAATTAAAGAAAGCACACAAGGCCCAAGATGAGAAAGAGTGTCATGCTCAGGTTGCTGAATGCCAGAAGAAGTGCCATAAAATCAATGGAAAGATATTTCCAAATGATGTGCCTGCTATCTCTAAAGAAACAACAGAAACAAGTGGTGCTCTTTGGGACATCTTTCGGAGGGAGGATACTGAAAAGTTAGAAGCATATCTACGAAAACATTCTAAAGAATTTAGACATACTTATTGCTGTCCAGTTCAAAAGGTTGTCCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTAAAGGAAGAATTTGGTGTAGAACCTTGGGCGTTTGAGCAGAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGTCCACACCAAGTTAGGAATCTCAAGTCATGCACTAAAGTTGCTTCAGATTTTGTGTCTCCTGAGAATATTCATATGTGCTTGCGATTAAAGGATGAATTTCGTCGTCTTCCTAGGAATCACAAGGCGAGAGAAGATAAGCTAGAGATAAAGAAGATGATCGTGTATGTTGTAGATCAAATAGTCAAGGAATTAGAAGCATTGGTGGAGTGTTCTTGA 2487 0.3904 MDLVFSPQGKSNPQTEDKLFLRCSDSFGIPTRGKRRYGSKKRKVQEGILASSKKRKVQEGREDILASSKNTKLPSRKVHEPKKSLSGLNKKRKLEDNIKINNLEEDEEVLSLSRTKSRRKTRNMDNMKDTEQNSKICHQCMKKERASFVPCTKCQKMYCLGCINNWYPDMKIEDIAASCPFCRKNCNCNVCLRSKGMIKTSNGKFTDCEKVRYLQYMINSLFPFVEQIREEQSHEHEIEAKIQGKSCSEIKIPQSTCSDDERIYCDHCATSIVDLYRSCPKCSFEICLTCCQEIRNGSISPQPELKFEYDNKGIEYMHGGHPQPVYCDLGTSEDTIEIYTDWNANSDGSIRCAPKEMGGCGDCVLELKCILPNGLISNLEDKTRNMLKNFCKIEHKTLQKEAVLSSNSMIRAAFRDGTNDNNIYCPVSSDLSEEGLFLFQQHWIKGEPIIVRDVLKQGTGLSWEPKVTWRAFCENLVSGNSSNASKVKAIDCLSCCEVEILIRDFFKGYTKGRTYMNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSDPRAGILNLAAKLPAHVLKPDMGPKTYIAYGTKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLTDEQHPVISKLKKAHKAQDEKECHAQVAECQKKCHKINGKIFPNDVPAISKETTETSGALWDIFRREDTEKLEAYLRKHSKEFRHTYCCPVQKVVHPIHDQCFYLTLEHKKKLKEEFGVEPWAFEQKLGEAVFIPAGCPHQVRNLKSCTKVASDFVSPENIHMCLRLKDEFRRLPRNHKAREDKLEIKKMIVYVVDQIVKELEALVECS 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2553g00001 828 MobiDBLite consensus disorder prediction 42 66 - -
Gabi2553g00001 828 SMART cupin_9 538 791 IPR003347 -
Gabi2553g00001 828 MobiDBLite consensus disorder prediction 73 87 - -
Gabi2553g00001 828 ProSiteProfiles JmjC domain profile. 557 791 IPR003347 -
Gabi2553g00001 828 CDD cupin_RmlC-like 715 763 - -
Gabi2553g00001 828 ProSiteProfiles Zinc finger RING-type profile. 137 183 IPR001841 -
Gabi2553g00001 828 Gene3D Cupin 419 800 - -
Gabi2553g00001 828 MobiDBLite consensus disorder prediction 28 87 - -
Gabi2553g00001 828 Pfam JmjC domain, hydroxylase 672 774 IPR003347 -
Gabi2553g00001 828 SUPERFAMILY Clavaminate synthase-like 437 822 - -
Gabi2553g00001 828 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 43 825 IPR045109 GO:0032454|GO:0033169
Gabi2553g00001 828 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 131 201 IPR018866 -
Gabi2553g00001 828 FunFam Transcription factor jumonji domain-containing protein 420 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2553g00001 Gabi-Chr2553 31155 35316 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2553g00001 JmjC 9.7e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2553g00001 K15601 K21989 gmx:100801772 1153.66