Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00048 ATGTCTCACTCTGAAACCAAGAAGAAGAAGAAGCAGCAACTCAGCACCAAAAATGACTTGGAAGAATCAACCCCAACCCCAACCCAGAAGGAGAATCAGGAGAAAGAAGATTTGATGATCAAACCTCAGAGCTTCACACCTCCAATCGACACCTCTCAATGGCCCATCCTCCTCAAGAACTACGACCGCCTCAACGTTCGAACGGGTCACTATACCCCTATCCCCTCGGGCTTTTCCCCTTTGAAACGGCCCATCGCCGAGTACCTCAAGTATGGTGTTCTCAATCTGGATAAGCCCGCAAACCCTTCTTCTCATGAGGTTGTCGCTTGGATCAAGCGCATCCTTCGGGTCGAAAAAACGGGTCACAGCGGCACCCTTGATCCCAAAGTCACCGGAAACCTAATCGTTTGCATTGACAGAGCCACGCGCTTGGTCAAATCCCAACAGGGTGCCGGAAAAGAGTACGTGTGCGTCGCACGCTTGCACTCCTCCGTCCCCGACGTTGCTAGGGTTGCTCGCGCCCTCGAGACACTCACCGGCGCCGTTTTTCAGCGCCCGCCGTTGATCTCCGCCGTGAAGCGCCAGCTTAGGATTAGGACCATCTATGAAAGTAAGCTCCTTGAGTTTGACCCTGATAAGCATTTGGTTGTTTTTTGGATTTCTTGTGAGGCTGGTACCTATGTGAGGACCATGTGTGTTCATTTGGGTTTGGTTCTTGGTGTGGGTGCTCACATGCAGGAGCTTAGGAGGGTGAGGTCTGGTATCATGGGTGAGAAGGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAGTGGGTTTATGATAATTTCAGGGATGAGAGTTATTTGAGGAGGGTTGTTATGCCTTTGGAGATGCTTTTGACTAGTTATAAGAGATTGGTTGTTAAGGATTCTGCTGTCAATGCTATTTGTTATGGTGCCAAGTTTATGATTCCTGGCTTGCTTAGGTTTGAGAATGATATTGATGTTGGCGAGGAGGTTGTGCTTATGACCACTAAGGGCGAAGCTATTGCTCTTGGCATTGCTGAGATGACTACTGCTGTCATGGCTACTTGTGATCATGGTGTTGTGGCCAAGATCAAAAGGGTGGTCATGGATCGAGATACCTATCCCAGGAAATGGGGTTTGGGCCCCAGGGCATCCATGAAAAAGAAACTCATTTCTCAGGGGAAGCTGGATAAGCATGGCAAGCCGAATGACAGTACTCCCCAAGAGTGGCTCAGGAATCTGGTTTTGCCCGCTGGTGGGGATAGCGTGATTGCTGGTATGGCTGCTGCTCCTGAACTTGATGCTGCCAAGAAAGAGACTGTTGTAGTAGAGAAGGCCAAGGTTGAGAAGGATGGAGATGGGGAAGGGCGCAAAAGGAAGAAACATGAAAGCACTGATAGCCCTGCTTCCCTTCCTGTTAAGAAGGTGAAAGTTGATGAAGTTGAAAAGCAAGAGACAGTAAAGGTAAAGAATGTAAAAGAAGGGACTCCGGAGGTTGAAGTTCAGAAGAAAGAGAAGAAGAAAAAGAAGAAGGACAAGGAGAATGGTGGAGTGGCATCTTCAGACGAGGAGAAAACTGAAAAGTCTGAGAAGAAGAAGAAGCACAAGGAGAAGGCTGAAGATGGTTCCCCAAATTTTGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATAACGAAGATGCTGCTGCTGAAATTACTAATGGAAAGGATGACAGTAATGCTGATAGGAGTGAAAAGAAGCATAAGAAAAAGAGAAACAAAGATGCTGAGGAAGAATAG 1800 0.4722 MSHSETKKKKKQQLSTKNDLEESTPTPTQKENQEKEDLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGFSPLKRPIAEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVARVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDPDKHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNFRDESYLRRVVMPLEMLLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISQGKLDKHGKPNDSTPQEWLRNLVLPAGGDSVIAGMAAAPELDAAKKETVVVEKAKVEKDGDGEGRKRKKHESTDSPASLPVKKVKVDEVEKQETVKVKNVKEGTPEVEVQKKEKKKKKKDKENGGVASSDEEKTEKSEKKKKHKEKAEDGSPNFDKSEKKKKKKKDKDNEDAAAEITNGKDDSNADRSEKKHKKKRNKDAEEE 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00048 599 Pfam PUA domain 299 371 IPR002478 GO:0003723
Gabi2552g00048 599 MobiDBLite consensus disorder prediction 1 47 - -
Gabi2552g00048 599 MobiDBLite consensus disorder prediction 1 17 - -
Gabi2552g00048 599 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 58 383 IPR004802 GO:0006396
Gabi2552g00048 599 SUPERFAMILY PUA domain-like 298 379 IPR015947 -
Gabi2552g00048 599 Gene3D Pseudouridine synthase 84 290 - -
Gabi2552g00048 599 SUPERFAMILY Pseudouridine synthase 51 296 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gabi2552g00048 599 Pfam tRNA pseudouridylate synthase B C-terminal domain 229 295 IPR032819 -
Gabi2552g00048 599 SMART pua_5 299 373 IPR002478 GO:0003723
Gabi2552g00048 599 SMART DKCLD_2 50 108 IPR012960 -
Gabi2552g00048 599 Pfam TruB family pseudouridylate synthase (N terminal domain) 112 228 IPR002501 GO:0006396
Gabi2552g00048 599 Gene3D PUA domain 51 382 IPR036974 GO:0003723
Gabi2552g00048 599 CDD PseudoU_synth_hDyskerin 90 272 - -
Gabi2552g00048 599 ProSiteProfiles PUA domain profile. 298 373 - -
Gabi2552g00048 599 FunFam H/ACA ribonucleoprotein complex subunit CBF5 84 290 - -
Gabi2552g00048 599 CDD PUA_Cbf5 297 371 - -
Gabi2552g00048 599 Pfam DKCLD (NUC011) domain 51 108 IPR012960 -
Gabi2552g00048 599 NCBIfam uncharacterized domain 2 293 370 IPR004521 GO:0003723
Gabi2552g00048 599 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 6 544 IPR004802 GO:0006396
Gabi2552g00048 599 MobiDBLite consensus disorder prediction 450 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00048 Gabi-Chr2552 255800 257851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00048 1 481 NAC Transcription Factor Family AT3G57150 79.834 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00048 K11131 - gmx:100806355 892.108