Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00047 ATGGGTTTGCCAAACATACAGTTGATGCCAGAAATTTGTCAGGTGATCTGTCATGGGGAGGGGTCTGAGTCTGAGTCTTGTTCATCATCAGATTGCAAAGTTTGCTACAAGATTTGCCTACCTAATCCCCTATATTCTGCAGCACCACCACCACTACCACCACAAGAAGTTCCTCCTTTCTATACAGCTGATGATGAACATCAAGGAAACCATCACAAAATCTCCAACTATTTATTCCTCACTCTTGCTCTTCTGGCTGCTGCTTTCTTTGTAGTTTTGTTCCGTGTCATATATGCCAGGCTTTGCTCAAGGAGGAGGATACCATCAAGGCAGCAAACGCAGGTGACCCGTGATGATTTTCTTGATGAAGAACATGGTCCTGTGGTGGACCACCCCATTTGGTATATCCGTACCCCTGGTCTTCATCAATCCATTATCAGTGCCATCACAATTTGTAAGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACAGATTGCGCTGTTTGCTTGAGTGAGTTTCAAGAGGATGAGAATCTCAGACTTTTGCCAAAGTGTCATCATGCTTTTCATTTACATTGTATTGATACCTGGCTCAGATCACATACCAATTGTCCCATGTGCCGGGCTCCCATTGTCACCAACCCTGCAACTGCAAGCATTCCATCTCTGGACTCTAATGTTGTTGATTCAAGTTCCTTGGAAAATACCCACATGGAAATCTTGGAAAATAGTGGTGAAACCAGTGGAGGAATGGAAAATAGTACTCCTGATGTTGAATTGAGGAATAGGGCAGAGGAAGAATGCCAATTGGAAGTTGAAGATGGGATAAGGGTATGTGAAACTGAAAGTTCAGTTGCAGAGGTGGTGAGAATTCGACCAAGAAGATCTGTTTCTCTGGATTCTCCTTCTGTTGCTGATATCAATATCGCTCTTGCTGCTGTTCTATCAGTAGAATCTAATGGTAATTCAAATAGAGTGCTTGGTGGCGTCATTGAACCTACCTTTTCAAAGAGAGTTACTGGAAACGAGAGTTTGCCAACAACTTCCAAAGGTAGCTCTTCTTTCAGGTTAACAAGATATCTGCAGGGTGTTCCTAGTTCAATGAAGAGGTCACGCTCCTACAACGGGAAATACCTTCTATCCTGGTATAGCCGTAGTCAAAAGAAGCCAAATGGTCCTCTGAGAAGCTTTTAA 1194 0.4313 MGLPNIQLMPEICQVICHGEGSESESCSSSDCKVCYKICLPNPLYSAAPPPLPPQEVPPFYTADDEHQGNHHKISNYLFLTLALLAAAFFVVLFRVIYARLCSRRRIPSRQQTQVTRDDFLDEEHGPVVDHPIWYIRTPGLHQSIISAITICKYKKGEGLIEGTDCAVCLSEFQEDENLRLLPKCHHAFHLHCIDTWLRSHTNCPMCRAPIVTNPATASIPSLDSNVVDSSSLENTHMEILENSGETSGGMENSTPDVELRNRAEEECQLEVEDGIRVCETESSVAEVVRIRPRRSVSLDSPSVADINIALAAVLSVESNGNSNRVLGGVIEPTFSKRVTGNESLPTTSKGSSSFRLTRYLQGVPSSMKRSRSYNGKYLLSWYSRSQKKPNGPLRSF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00047 397 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 66 222 IPR044675 -
Gabi2552g00047 397 SMART ring_2 166 207 IPR001841 -
Gabi2552g00047 397 Pfam Ring finger domain 165 208 IPR001841 -
Gabi2552g00047 397 SUPERFAMILY RING/U-box 160 222 - -
Gabi2552g00047 397 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Gabi2552g00047 397 CDD RING-H2_EL5-like 165 208 - -
Gabi2552g00047 397 FunFam RING-H2 finger protein ATL54 141 214 - -
Gabi2552g00047 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 215 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00047 Gabi-Chr2552 253516 254949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00047 82 272 C3H Transcription Factor Family AT1G72220 44.041 2.81e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00047 - - gmx:100804758 456.062