Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00038 ATGGCGAGCTACCTCGTTCGCTATCATTCCGACCAGCTTCTCTCCATCGCTTCTTCTCCCGATTCCAACCTTCATTTCCCTCTTTACGTCGATTTCGCAGAGTTGATGGAGGACGATCCTCGCATTGCCCGTCTCCTATTTGCCCAACCCAACACCTACTTGCAAGTATTCAATGATGCTGCTCTTTGGGCCCATAAAATCGTATTGGGAGATATGGCGGATGACAAGAATGGGGTTGAGAAAAAGTTCATTCATGTTCGCATTAACATCAGTGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCAACCATAGGACGTGTTCGAGTGGAGCACCGTGGAATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCCGGAGCAATCAAGATGCATGAAGGAGAAAGGAAGTACATGTGCCACAAATGCAAAAACAGCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATACCATTACCGTCAATTTGCCCAGTTCAGAAGTCTAAGCCCTGCGGAGGCACAAAATTCCAGTATGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTTGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACCGGTATCTTAACAGCAAAATGGTCCCCAGAATTGAAGGATGTGCGCTGTGACCTTGATCCTGTATTAATAGCCAACAATATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATGTTGTTATGAAATTCAAGCAGTTTTGGTTTCACTTCCAAGATGCACCTTTAAAAGGGAGGAATGCTATTCTACGAGGAATTTGCCCCCAAGTATTTGGTCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGATAAGGGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGTACTGGAAAATCTCAATTTCTAAAATTTTCTGCAAAATTGAGCAATCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTAAAGGATGGAGGTGAGTGGATGTTGGAAGCTGGGGCCCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACGATTCATGAAGCCATGGAGCAGCAGACAATAAGTGTAGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGCGCCACAAATCCGAAGGGACATTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCCGGTCCTTTATTAAGCAGGTTTGATATTGTCCTCGTGCTCTTGGATACAAAGAATCCTGAATGGGACGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCCGATAGAACCAACAGTGATGAAGATCTGGCAAACATCTGGCCTCTTCCTACACTCAAGAGGTATATACACTATGTGAAAGAAAATTTCAGACCAGTTCTTACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCAAAATGCAGCAAGGACAACTGTCCGCATGCTGGAAAGTTTGATACGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCTGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCTAAGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATAGATGACTTTTCTGATATGAATAGCATGGAGGGCTGA 1953 0.4327 MASYLVRYHSDQLLSIASSPDSNLHFPLYVDFAELMEDDPRIARLLFAQPNTYLQVFNDAALWAHKIVLGDMADDKNGVEKKFIHVRINISGSPLECPETFPTIGRVRVEHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFTVYPEVEARNSIPLPSICPVQKSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGILTAKWSPELKDVRCDLDPVLIANNIRRINELKSEIDISDDVVMKFKQFWFHFQDAPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFSAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTNSDEDLANIWPLPTLKRYIHYVKENFRPVLTREAEIVISSYYQLQRKSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGSIDDFSDMNSMEG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00038 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 333 348 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 419 432 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 405 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 Pfam MCM OB domain 107 235 IPR033762 -
Gabi2552g00038 650 SMART mcm 100 601 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 27 625 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 Pfam MCM P-loop domain 294 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 SUPERFAMILY Nucleic acid-binding proteins 25 243 IPR012340 -
Gabi2552g00038 650 Gene3D - 131 187 - -
Gabi2552g00038 650 FunFam Probable DNA helicase MCM9 270 604 - -
Gabi2552g00038 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 609 IPR027417 -
Gabi2552g00038 650 CDD MCM9 295 599 - -
Gabi2552g00038 650 Gene3D - 107 236 IPR012340 -
Gabi2552g00038 650 Pfam MCM AAA-lid domain 518 599 IPR041562 -
Gabi2552g00038 650 SMART AAA_5 334 483 IPR003593 GO:0016887
Gabi2552g00038 650 ProSiteProfiles MCM family domain profile. 292 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi2552g00038 650 Gene3D - 267 605 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00038 Gabi-Chr2552 193435 206428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00038 1 624 Core DNA Replication Machinery Family AT2G14050 76.236 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00038 K10738 - gmx:100776255 1166.76