Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00034 ATGGAAAACGACGACGTCGACATGCATGCTGCAGACAACAACGAAGCGGTAATGGTTTCCGAATTGGATGACATGAAGAAGCGTTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATCCTGCAACTTCTTCTGCGAGTCAGGCCAATAGAGAGGAAGTAGATTCTCGATCAATCTTTGTTGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTACAGCAGCATTTTCAATCATGTGGAACAGTTAACCGAGTCACCATTCGTACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGGTGGATGCTGTTCAAGAGGCCCTTTCGCTGAATGAATCTGAACTTCATGGACGCCAATTGAAGGTAACAGCCAAGAGGACCAACATACCAGGCATGAAGCAGTATCGTCCCCGCCGGTCCAACCCTTACATGGCGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGGTACAGCCCCTACTATTGA 603 0.476 MENDDVDMHAADNNEAVMVSELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATSSASQANREEVDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVDAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMAFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00034 200 MobiDBLite consensus disorder prediction 53 69 - -
Gabi2552g00034 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 148 IPR000504 GO:0003723
Gabi2552g00034 200 SMART rrm1_1 73 144 IPR000504 GO:0003723
Gabi2552g00034 200 CDD RRM_II_PABPs 73 144 - -
Gabi2552g00034 200 Gene3D - 8 145 IPR012677 -
Gabi2552g00034 200 SUPERFAMILY RNA-binding domain, RBD 60 170 IPR035979 GO:0003676
Gabi2552g00034 200 MobiDBLite consensus disorder prediction 47 69 - -
Gabi2552g00034 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 16 169 - -
Gabi2552g00034 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 142 IPR000504 GO:0003723
Gabi2552g00034 200 Coils Coil 15 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00034 Gabi-Chr2552 165889 170331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00034 73 143 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 3.17e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00034 K14396 - gmx:100791351 362.073