Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00033 ATGGAAAACGACGACGTCGACATGCATGCTGCAGACAACAACGAAGCGGAATTGGATGACATGAAGAAGCGTTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATCCTGCAACTTCTTCTGCGAGTCAGGCCAATAGAGAGGAAGTAGATTCTCGATCAATCTTTGTTGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTACAGCAGCATTTTCAATCATGTGGAACAGTTAACCGAGTCACCATTCGTACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGGTGGATGCTGTTCAAGAGGCCCTTTCGCTGAATGAATCTGAACTTCATGGACGCCAATTGAAGGTAACAGCCAAGAGGACCAACATACCAGGCATGAAGCAGTATCGTCCCCGCCGGTCCAACCCTTACATGGCGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGGTACAGCCCCTACTATTGA 591 0.4772 MENDDVDMHAADNNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATSSASQANREEVDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVDAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMAFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00033 196 MobiDBLite consensus disorder prediction 49 65 - -
Gabi2552g00033 196 CDD RRM_II_PABPs 69 140 - -
Gabi2552g00033 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Gabi2552g00033 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 165 - -
Gabi2552g00033 196 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2552g00033 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Gabi2552g00033 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Gabi2552g00033 196 MobiDBLite consensus disorder prediction 43 65 - -
Gabi2552g00033 196 SUPERFAMILY RNA-binding domain, RBD 56 166 IPR035979 GO:0003676
Gabi2552g00033 196 Gene3D - 3 141 IPR012677 -
Gabi2552g00033 196 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00033 Gabi-Chr2552 165889 170446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00033 69 139 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 2.99e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00033 K14396 - gmx:100791351 363.614