Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00032 ATGGAAAACGACGACGTCGACATGCATGCTGCAGACAACAACGAAGCGGTAATGGAATTGGATGACATGAAGAAGCGTTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATCCTGCAACTTCTTCTGCGAGTCAGGCCAATAGAGAGGAAGTAGATTCTCGATCAATCTTTGTTGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTACAGCAGCATTTTCAATCATGTGGAACAGTTAACCGAGTCACCATTCGTACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGGTGGATGCTGTTCAAGAGGCCCTTTCGCTGAATGAATCTGAACTTCATGGACGCCAATTGAAGGTAACAGCCAAGAGGACCAACATACCAGGCATGAAGCAGTATCGTCCCCGCCGGTCCAACCCTTACATGGCGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGGTACAGCCCCTACTATTGA 597 0.4757 MENDDVDMHAADNNEAVMELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATSSASQANREEVDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVDAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMAFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00032 198 MobiDBLite consensus disorder prediction 51 67 - -
Gabi2552g00032 198 CDD RRM_II_PABPs 71 142 - -
Gabi2552g00032 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Gabi2552g00032 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Gabi2552g00032 198 Gene3D - 7 143 IPR012677 -
Gabi2552g00032 198 MobiDBLite consensus disorder prediction 45 67 - -
Gabi2552g00032 198 SUPERFAMILY RNA-binding domain, RBD 58 168 IPR035979 GO:0003676
Gabi2552g00032 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 16 167 - -
Gabi2552g00032 198 SMART rrm1_1 71 142 IPR000504 GO:0003723
Gabi2552g00032 198 Coils Coil 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00032 Gabi-Chr2552 165889 170447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00032 71 141 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 2.94e-08 51.2