Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00031 ATGGAAAACGACGACGTCGACATGCATGCTGCAGACAACAACGAAGAATTGGATGACATGAAGAAGCGTTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATCCTGCAACTTCTTCTGCGAGTCAGGCCAATAGAGAGGAAGTAGATTCTCGATCAATCTTTGTTGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTACAGCAGCATTTTCAATCATGTGGAACAGTTAACCGAGTCACCATTCGTACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGGTGGATGCTGTTCAAGAGGCCCTTTCGCTGAATGAATCTGAACTTCATGGACGCCAATTGAAGGTAACAGCCAAGAGGACCAACATACCAGGCATGAAGCAGTATCGTCCCCGCCGGTCCAACCCTTACATGGCGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGGTACAGCCCCTACTATTGA 588 0.4745 MENDDVDMHAADNNEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATSSASQANREEVDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVDAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMAFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00031 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Gabi2552g00031 195 Gene3D - 1 149 IPR012677 -
Gabi2552g00031 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Gabi2552g00031 195 MobiDBLite consensus disorder prediction 42 64 - -
Gabi2552g00031 195 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2552g00031 195 SMART rrm1_1 68 139 IPR000504 GO:0003723
Gabi2552g00031 195 Coils Coil 10 44 - -
Gabi2552g00031 195 MobiDBLite consensus disorder prediction 48 64 - -
Gabi2552g00031 195 CDD RRM_II_PABPs 68 139 - -
Gabi2552g00031 195 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 13 164 - -
Gabi2552g00031 195 SUPERFAMILY RNA-binding domain, RBD 55 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00031 Gabi-Chr2552 165889 170447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00031 68 138 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 2.99e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00031 K14396 - gmx:100791351 368.237