Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00025 ATGAACAAGTTAATGTGTTGGGCTTTCTCTTGCTTTCAATTTCAGTTGCTATTGCTACTGTTACTGTTAGTGTTTAATAATGCACACTCTGCCAACATTGTCAAGACCTTACCTGGCTTTCAGGGTCCCTTGCCTTTCAAGCTCGAGACAGGATATGTATTGGTGGAGGAATCGGAGCTGTTCTACTATTTTGTTGAGTCAACAGGAAAGCCACGGATTGATCCTCTTCTTCTTTACTTGGTTGGAGGTCCTGGATGTTCTGGTTTAAATGGACTATTCTACCAAACTGGTCCATTGGCTTTCAATGGGACAGAGTATTCTGGGGGTTTCCCACAATTAATATTAAGGCCATACCCCTGGACAAAGACTGCTAGCATCATATTTCCTGATGTTCCTGTCGGTACTGGCTTCTCGTATGCTACAACCCCAGAAGGTTACCTCATCTCAGACAGTAAATCAGCTAGGCAAACTTACAAATTCTTAAGAAAGTGGCTGATTGATCACCCTGAATACATCTCGAATAGGCTCTATATTGCAACGGATTCATACAGTGGAATCTTTGCGCCAATCATTTCACAGCATATATTGGATGGTAATGCAGCTGAACTTCAGCCGTATATAAACTTGATAGGATTCCTGAGTGGCTCTCCACATACTAGTATACCGCTAGAGCATAATTCAAAAATACCCTATGCTCGCAATAAGGCACTCATATCAGACAAGCTTTATGAGGCAGCCAAAGAAAATTGCAATGGGTGGTACTATGAGGTAGATCCCTCAAATGCAAAATGTGTGGAAGCACTTCAACCAATAGTTAAGTGCCTTGCTGATATCTATGAAGAAAATGTTCTGGAACCTAATTGTGCATTAATATCACCAAAACCAGATTATGAATTTTCTGGAAGAGTTCTCAAAGAAGCCAGATATTTCCATCATCCATCTTTAAAACTTAAAGCTCAGGACTGGTGGTGCAAGATTTTTGTTTATATACTTTCAGACATATGGGCAAACAACAAGACCGTTCAGGAGGCTCTCTATGTTCGTGAAGACATATACCTCGCTGACATCGAAAATGTAATTCCTTACCAGAAGAATCTGACTGAGACAGGTTTACAAGTATTACTTTACACAGGCGACCTTGACATGGTTATTCCTCATATATCAACTGAAGAATGGTTGAGATCCCTGAATCTTACTATAGATGCTCCTTGGATGCCCTGGTTCGTTGATGGTCAAGTTGCAGGGTACCGAGTTGTACATTCTAATACAGGATACCGCTTGACCTATGCAACTCTCAAGGGATCGGGTCACTCTCCTACAGAATACTTCCATGAACGATGCTTTGAGATGTTTGAAAGGTGGATACATTTTTATCCCTTGTAA 1383 0.41 MNKLMCWAFSCFQFQLLLLLLLLVFNNAHSANIVKTLPGFQGPLPFKLETGYVLVEESELFYYFVESTGKPRIDPLLLYLVGGPGCSGLNGLFYQTGPLAFNGTEYSGGFPQLILRPYPWTKTASIIFPDVPVGTGFSYATTPEGYLISDSKSARQTYKFLRKWLIDHPEYISNRLYIATDSYSGIFAPIISQHILDGNAAELQPYINLIGFLSGSPHTSIPLEHNSKIPYARNKALISDKLYEAAKENCNGWYYEVDPSNAKCVEALQPIVKCLADIYEENVLEPNCALISPKPDYEFSGRVLKEARYFHHPSLKLKAQDWWCKIFVYILSDIWANNKTVQEALYVREDIYLADIENVIPYQKNLTETGLQVLLYTGDLDMVIPHISTEEWLRSLNLTIDAPWMPWFVDGQVAGYRVVHSNTGYRLTYATLKGSGHSPTEYFHERCFEMFERWIHFYPL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00025 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 439 IPR001563 GO:0004185|GO:0006508
Gabi2552g00025 460 Gene3D alpha/beta hydrolase 26 294 IPR029058 -
Gabi2552g00025 460 FunFam Serine carboxypeptidase-like 19 27 294 - -
Gabi2552g00025 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Gabi2552g00025 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Gabi2552g00025 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Gabi2552g00025 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Gabi2552g00025 460 Pfam Serine carboxypeptidase 38 456 IPR001563 GO:0004185|GO:0006508
Gabi2552g00025 460 SUPERFAMILY alpha/beta-Hydrolases 34 456 IPR029058 -
Gabi2552g00025 460 Gene3D - 330 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00025 Gabi-Chr2552 97429 101737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00025 26 57 Calmodulin-binding Proteins AT2G22960 59.375 4.51e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00025 K16296 - zju:107404767 535.413