Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00024 ATGGCGAACGCAGAAGGTGCGTTGAGTTTGGAGTCACTTGCGTGCATAGATGCAAGCTCTCTGTCACAGTCAGAGCTTCATGCACTATCTCTCTCTTCTCTTTCTTCCTTTGACCTACGCTCTACGCATGACCTTGTCAATCCCAAAATCGACCCTTCCCTCTTCAACGAGAGCGCTGGTTCACGCCGTCAGACCTACTCTCGACCCCGCCGTCGCAGCCGCGTCGCCGGCCTTCTTCCCACCCCTAAGCTCCCTCTCCCTCTCCCTCTCCCTTCCTTCCCGCAAAACGCCGAGAATCGCGTGATAATCGATTACCTGAAGCAATTGATCAGGGAAGACCCCAAATTCGATCAGGTGGAGCTAGCTCCACCTCCACCTCCACCTCCACCTTGTGTTCCCGAGCCTGAGCCGAGAGCTGAACCGGATCTTGTGAGATTTGGTAGCGGGGAGAGGAAGAGGAAGAGAGGGAGGAAGCCCAAAGTGAAGGTGCATTTGGAGGAGTGTTACAGAGGAATGGAGATTGTGAACAAGAACGGCGTTCCGATCGATGTTTCCGCGTTGGCGAACTCCGAGGACCCGTTCGCGGAGGAGCTGAGGAGACGGACGGAGGGTTTGCAGAGTGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGTTGGGACAATGGGGTAGCAGGAGGAAGAAGAGGAGGATTGTTGATGCTGCTGATTTCGGTGATGTGTTGCCTCTTGGTTGGAAGCTTCTTCTTGGTTTGAAGAGAAAAGATGGTCGTGCATGGATCTATTGCCGCAGATACATAAGCCCTAGTGGACAGCAATTTGTGACTTGCAAAGAAGTTTCTTCATATTTGCAGTCTCTTTACGGTCACAGTGATGCTCAATTACAAATTGTTCCTGGGAGTGAAAATATACTTCAGGAACATAGTTTGACTGCTGAAAACTCTGCAGGTGTTACCCATGAGGATCAAGATCAATGGCAGATTGTTGCAACTAACTCGGATGTGCCTGGTTTATCTGTTTCGAATGAACGAGTGAGGGAAGTGGCCTTGTTGGGGATTGACAATCTTGCAGATGTGCAGATACATGACCTGTTTGAATGTCACAAATGCAGCATGACCTTTGATGAGAAGGATTCATACTTGCAGCACCTGTTGTCTTTTCACCAGAGGACGACGAGGAGGTATCGGCTTGGTTCTTCTGTTGGAGATGGAGTTATAATTAAGGATGGAAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTCCTGGAGAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAGAGTTGACGATTCCCCAGGTCAGGGAAATGTCCAAAGGACAGACATGTCTCCAGTCAGGGAGGACGTGCCTTCAAGGATCTCTAAGATGGATGCCCTTATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCATGGAACCCCATAGTTCAGCTAAACTGAATATGATTCCTGCTTTAGAAATTGCTGTTGGTGCCTTAGATCAAGACATAAACTTTGAGTCTCCAGTCAGTGAGGATAGCTTGACTGACACAGATGTGGTTCAAGATTTAAATGAGCAAGATAGTCCATATTCACTTGTGGATGGAAAAGTAGAGGAAAATTATGATGATAACCGAATTATAGATGCCAGGATGGTTACTTGTCTAGATAACATGGTTTTGTTATCTGTAAATGAGCAAAATGTTAATGCATCTGAGACTTCTAAGGGAAAAGATGATGTGGCATTGACTGTTGAGGCGTTTGATCAGTCTGGTATTAATTTGGAAGTAGTTTCTCAAAGCCCTTTATTTCCTTTATCTGGCAATCACATAATGCCCGAATCTGAGAAGAATGAGAAATCGGGTTACACTAATACTAGGCAATTTGAACTTCATGAAGACAATTGTAATAAGAGTGAGTTGAAAACTGTTTTAGATGGCTGCAGGGATGTACCTGTTAGCTCTAATGTCCAAGAGATAGTAATGTCAGCTTCTGAAGAAAATGTGGTCCATTCAAGGGTTTCTAACCCCTCTATATCCACAGAGCAATCTTTGGATTGTTTTGCAGCATTCAGCTCAGATAAGTGGTGA 2112 0.4598 MANAEGALSLESLACIDASSLSQSELHALSLSSLSSFDLRSTHDLVNPKIDPSLFNESAGSRRQTYSRPRRRSRVAGLLPTPKLPLPLPLPSFPQNAENRVIIDYLKQLIREDPKFDQVELAPPPPPPPPCVPEPEPRAEPDLVRFGSGERKRKRGRKPKVKVHLEECYRGMEIVNKNGVPIDVSALANSEDPFAEELRRRTEGLQSEEELLGFLRDLLGQWGSRRKKRRIVDAADFGDVLPLGWKLLLGLKRKDGRAWIYCRRYISPSGQQFVTCKEVSSYLQSLYGHSDAQLQIVPGSENILQEHSLTAENSAGVTHEDQDQWQIVATNSDVPGLSVSNERVREVALLGIDNLADVQIHDLFECHKCSMTFDEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVDDSPGQGNVQRTDMSPVREDVPSRISKMDALIEIAQNSIMEDSVMEPHSSAKLNMIPALEIAVGALDQDINFESPVSEDSLTDTDVVQDLNEQDSPYSLVDGKVEENYDDNRIIDARMVTCLDNMVLLSVNEQNVNASETSKGKDDVALTVEAFDQSGINLEVVSQSPLFPLSGNHIMPESEKNEKSGYTNTRQFELHEDNCNKSELKTVLDGCRDVPVSSNVQEIVMSASEENVVHSRVSNPSISTEQSLDCFAAFSSDKW 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00024 703 Gene3D Classic Zinc Finger 353 438 - -
Gabi2552g00024 703 SUPERFAMILY DNA-binding domain 237 288 IPR016177 GO:0003677
Gabi2552g00024 703 MobiDBLite consensus disorder prediction 119 137 - -
Gabi2552g00024 703 ProSiteProfiles Zinc finger C2H2 type domain profile. 364 392 IPR013087 -
Gabi2552g00024 703 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 231 301 IPR001739 GO:0003677
Gabi2552g00024 703 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 3 630 IPR037472 -
Gabi2552g00024 703 ProSiteProfiles Zinc finger C2H2 type domain profile. 411 438 IPR013087 -
Gabi2552g00024 703 MobiDBLite consensus disorder prediction 117 158 - -
Gabi2552g00024 703 SMART c2h2final6 364 387 IPR013087 -
Gabi2552g00024 703 SMART c2h2final6 411 433 IPR013087 -
Gabi2552g00024 703 MobiDBLite consensus disorder prediction 48 78 - -
Gabi2552g00024 703 ProSitePatterns Zinc finger C2H2 type domain signature. 366 387 IPR013087 -
Gabi2552g00024 703 ProSitePatterns Zinc finger C2H2 type domain signature. 413 433 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00024 Gabi-Chr2552 92718 96207 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2552g00024 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00024 - - lang:109329666 832.402