Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00012 ATGGGCCCAGTTAAGTATGGCTTTAGCCTCGTTAAAGGGAAAGCAAACCACCCGATGGAGGACTATCATGTAGCAAAATTTGTCCAGTTCAGAGGGCAAGAGTTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACACTGTGCCAACCTATTTACAAAGGCATCTCTTTTCTAATATCTTGAAGGAAGATGACTTCTGGACTGATCCAAACAGTTGCATCGTTAGAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCGACTGCAGTGACTGCAATTCTTATAAATAATCAGAAGTTATGGATAGCAAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGAGAGGGGTGGCTATACAGATGACTGTTGATCATGAGCCCAATACTGAAAGGGGTATCATAGAGAACAAAGGCGGCTTTGTCTCAAACATGCCAGGTGATGTAGCAAGAGTGAATGGTCAGCTTGCAGTTGCACGAGCATTCGGAGACAAGAACCTAAAATCACACTTGAGATCTGATCCTGACGTACAACATGATGATATTGACCCTGAGACTGAACTTTTAATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAACCAAGAGGCTGTTGATATTGCAATAAGGATAAAAGACCCACAAAAAGCAGCCAAACAACTAGCTGCTGAGGCATTGGACAGAGAGAGTAAGGATGATATTTCCTGCATTGTTGTTCGTTTCAAGGGATGA 765 0.4314 MGPVKYGFSLVKGKANHPMEDYHVAKFVQFRGQELGLFAIYDGHLGDTVPTYLQRHLFSNILKEDDFWTDPNSCIVRAYETTDQAILSHSPDLGRGGSTAVTAILINNQKLWIANVGDSRAVLSRRGVAIQMTVDHEPNTERGIIENKGGFVSNMPGDVARVNGQLAVARAFGDKNLKSHLRSDPDVQHDDIDPETELLILASDGLWKVMANQEAVDIAIRIKDPQKAAKQLAAEALDRESKDDISCIVVRFKG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00012 254 Pfam Protein phosphatase 2C 14 245 IPR001932 -
Gabi2552g00012 254 Gene3D - 2 254 IPR036457 -
Gabi2552g00012 254 FunFam Probable protein phosphatase 2C 39 1 253 - -
Gabi2552g00012 254 SMART PP2C_4 1 250 IPR001932 -
Gabi2552g00012 254 PANTHER PROTEIN PHOSPHATASE 6 252 IPR015655 GO:0004722|GO:0006470
Gabi2552g00012 254 ProSiteProfiles PPM-type phosphatase domain profile. 5 252 IPR001932 -
Gabi2552g00012 254 CDD PP2Cc 4 252 IPR001932 -
Gabi2552g00012 254 SUPERFAMILY PP2C-like 4 253 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00012 Gabi-Chr2552 50198 54899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00012 2 253 PP2C-type Phosphatase Gene Family AT1G22280 70.930 1.72e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00012 K17506 - gmx:100787659 444.506