Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00011 ATGGATCGTCTCTGTTGCTTCAAACCTGCCAGTGCCACTCAGGTATCTAACTCTGGCAACGGCAAGAGCCATATGGGCCCAGTTAAGTATGGCTTTAGCCTCGTTAAAGGGAAAGCAAACCACCCGATGGAGGACTATCATGTAGCAAAATTTGTCCAGTTCAGAGGGCAAGAGTTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACACTGTGCCAACCTATTTACAAAGGCATCTCTTTTCTAATATCTTGAAGGAAGATGACTTCTGGACTGATCCAAACAGTTGCATCGTTAGAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCGACTGCAGTGACTGCAATTCTTATAAATAATCAGAAGTTATGGATAGCAAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGAGAGGGGTGGCTATACAGATGACTGTTGATCATGAGCCCAATACTGAAAGGGGTATCATAGAGAACAAAGGCGGCTTTGTCTCAAACATGCCAGGTGATGTAGCAAGAGTGAATGGTCAGCTTGCAGTTGCACGAGCATTCGGAGACAAGAACCTAAAATCACACTTGAGATCTGATCCTGACGTACAACATGATGATATTGACCCTGAGACTGAACTTTTAATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAACCAAGAGGCTGTTGATATTGCAATAAGGATAAAAGACCCACAAAAAGCAGCCAAACAACTAGCTGCTGAGGCATTGGACAGAGAGAGTAAGGATGATATTTCCTGCATTGTTGTTCGTTTCAAGGGATGA 837 0.4385 MDRLCCFKPASATQVSNSGNGKSHMGPVKYGFSLVKGKANHPMEDYHVAKFVQFRGQELGLFAIYDGHLGDTVPTYLQRHLFSNILKEDDFWTDPNSCIVRAYETTDQAILSHSPDLGRGGSTAVTAILINNQKLWIANVGDSRAVLSRRGVAIQMTVDHEPNTERGIIENKGGFVSNMPGDVARVNGQLAVARAFGDKNLKSHLRSDPDVQHDDIDPETELLILASDGLWKVMANQEAVDIAIRIKDPQKAAKQLAAEALDRESKDDISCIVVRFKG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00011 278 CDD PP2Cc 28 276 IPR001932 -
Gabi2552g00011 278 PANTHER PROTEIN PHOSPHATASE 22 276 IPR015655 GO:0004722|GO:0006470
Gabi2552g00011 278 Pfam Protein phosphatase 2C 38 269 IPR001932 -
Gabi2552g00011 278 SUPERFAMILY PP2C-like 26 277 IPR036457 -
Gabi2552g00011 278 Gene3D - 24 278 IPR036457 -
Gabi2552g00011 278 SMART PP2C_4 25 274 IPR001932 -
Gabi2552g00011 278 ProSiteProfiles PPM-type phosphatase domain profile. 29 276 IPR001932 -
Gabi2552g00011 278 FunFam Probable protein phosphatase 2C 39 21 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00011 Gabi-Chr2552 50198 54899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00011 1 277 PP2C-type Phosphatase Gene Family AT1G22280 67.596 2.83e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00011 K17506 - gmx:100787659 462.225