Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00010 ATGCTTGAACCGGATATGATGCACATAGTTTTTGTTCACTACTTGGAAGTTAAGGGTAACAAGACAAATATTGGAGGAGTTACCGATAGTGATGAGGTCACATCAGATTCCCAAAAGGTTACCTCTCCATCGTATGGCTTTCCCTCAAATTATAGCAGTGTACCTTCACCGAGTACCGATTCCATGAGCCCAACTAGCAGTTTGACATCTTTACGTGAAGATGCTGATTCTGAGGATATTCACCAAACAAGTTCTGGATTACGCCCATTACTTGAGTCGCAACAAATGGGGAATGGTCGTCCTCTGGCGGAAAAGGTTGATTCTGGTCCAAACAGTTCATATCTTATGCATCCCTTTTCAGGTAATCATGGACATTCATCAATTTCTGGAACGGATTATATCCCACCTGTTCACAGGGATAAATTTAGAGGAAATGATGCTACTTATATTGATCGCCAGAAAGCACATGGCATGACATCCTGGGACACTGTCTTGGAGCAATGCTCTGCAGAATTGCATAGCGATCCTTCTGTTGTATCATTTCCTTCCATGCCATCTAGTTCAATGAGAAATATCCTTGAACAAGAGCATACCATTTTGGGTGGTCTTTTAGAGAGCAAAAGTGGTCTCACTGAGGAAGCAGGGAGCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGACATATGCTGACCTTAACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGTCCCTAGTTTACTGGGGAATGAAACTCATAATGCCAGTTCTGAAATTGCTCCTGTCCTATTTAGTTTTTCTGGTGAGCCAAAAGAGCAGCTTGTGCAGCAAAACTATCCAGAACAGCATGCTGATGGACATTCTCAGGATGCACTATCTGCAAATAAAGTTCCTGGTGAAGAAAGTATCAGCTATGCCTTAACTATGAAGCGCACATTATTGGATAGAGATGGTAGCTTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTCGGAGATGTGGATGATTTGAATATGCAGTCCTCATCTGGTATTTCGTGGAGTACAGATGAATGTGGACATGTGATAGATGATACCTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTAGCATTATTGATTTTTCGCCTAAATGGGCTTTTGCTGAATCGGAAATTGAGGTGTTAATTATTGGATCATTTTTGAAGAGTGAACCGGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAATTGGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCGCCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTACAGAGAGGGCTTTTCTGGAAATGTAGATTTTGCAGATTTTTGTAACAGTTCAACTGAAATGCTGCTTCATTCTCGGCTGGAGGAGTTGCTTTCTTTAAAACCAGTGAACCCTTCAAATCAAAACTTTGAGGGTTATATGGAGAAAGGAAAGTTAATTTTTAAGCTTATTTCCCTGAGGGAGGAAGAAGAATATACGAGTAAGGAAGGAGAGCTTATAGAGATGGATATATCGCAACAAAAGGTGAAGGAGCATCTGTTTCACAGGCAGGTTAAGGAGAGGCTGTACTCATGGCTTCTTCACAAAATAACTGAGAGTGATAAAGGGCCAAATGTATTAGATAAGAATGGGCAAGGTGTCCTACATTTAGCAGCTGTTCTTGGTTATGATTGGGCCATAAAACCAATTTTATCCGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACATTGGGCGGCATCCTGTGGCAGGGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCAGATTCTGGAGCATTGACGGATCCATCTCCAGCATTTCCTTCAGGTAGAACACCTGCAGATCTTGCCTCTAACAATGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTCTTCATTAACTAGCCACCTCGAATTCCTCACAATGGATGATCAACATAACGGTGGTAGGGAAGAAATTTCAGGAATAAAAGCAGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTACTCTATGGTGATATGCCAGATGCCCTCTGCCTTAAGGATTCTCTTACTGCTGTCCGCAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAATATGAAGATGATGAGTTTGGATTGTCAGATCAGCTAGCTCTTTCCCTTCTAGCTTCTAAGGCGCATAAATCTGGACAAGGAGACGGTTTAGCCAATGCTGCAGCTGTACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACGATAATCTGGTCTGTGGGAATCCTGGAGAAGGTAATATTACGCTGGAGACGTAAGGGTAGTGGTTTACGTGGATTTCGACCAGAAGCCCTTAATAAGGTCCCCAGTCAAGAAAATGATCCTCCGAAAGAGGATGACTATGATTATCTTAAGGAAGGACGGAAACAAAGTGAGGAAAAGATCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAGTACCGGCGGCTGCTAAATGTTGTCGAGGACTTCCGTCAAACCAAGGCATGTAATATGGGTTTGATTAGTTCTGAAGAGACAGTTGATGGCGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 2907 0.4252 MLEPDMMHIVFVHYLEVKGNKTNIGGVTDSDEVTSDSQKVTSPSYGFPSNYSSVPSPSTDSMSPTSSLTSLREDADSEDIHQTSSGLRPLLESQQMGNGRPLAEKVDSGPNSSYLMHPFSGNHGHSSISGTDYIPPVHRDKFRGNDATYIDRQKAHGMTSWDTVLEQCSAELHSDPSVVSFPSMPSSSMRNILEQEHTILGGLLESKSGLTEEAGSSQSLQSNWQIPFEDNSGHMLTLTQSLGLEFGSDYVPSLLGNETHNASSEIAPVLFSFSGEPKEQLVQQNYPEQHADGHSQDALSANKVPGEESISYALTMKRTLLDRDGSLKKVDSFSRWITKELGDVDDLNMQSSSGISWSTDECGHVIDDTSLSPSLSQDQLFSIIDFSPKWAFAESEIEVLIIGSFLKSEPEVTTCNWSCMFGELEVPAEVLANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGFSGNVDFADFCNSSTEMLLHSRLEELLSLKPVNPSNQNFEGYMEKGKLIFKLISLREEEEYTSKEGELIEMDISQQKVKEHLFHRQVKERLYSWLLHKITESDKGPNVLDKNGQGVLHLAAVLGYDWAIKPILSAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADSGALTDPSPAFPSGRTPADLASNNGHKGISGFLAESSLTSHLEFLTMDDQHNGGREEISGIKAVQTVSERTATPVLYGDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDDEFGLSDQLALSLLASKAHKSGQGDGLANAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRPEALNKVPSQENDPPKEDDYDYLKEGRKQSEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACNMGLISSEETVDGVEDLIDIDMLLDDDNFIPIAFD 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00010 968 ProSiteProfiles IQ motif profile. 792 821 IPR000048 GO:0005515
Gabi2552g00010 968 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 930 - -
Gabi2552g00010 968 MobiDBLite consensus disorder prediction 21 121 - -
Gabi2552g00010 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 842 IPR027417 -
Gabi2552g00010 968 SUPERFAMILY E set domains 383 469 IPR014756 -
Gabi2552g00010 968 ProSiteProfiles Ankyrin repeat region circular profile. 583 614 - -
Gabi2552g00010 968 FunFam Calmodulin-binding transcription activator 2 376 472 - -
Gabi2552g00010 968 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
Gabi2552g00010 968 Gene3D - 792 839 - -
Gabi2552g00010 968 SMART iq_5 814 836 IPR000048 GO:0005515
Gabi2552g00010 968 SMART iq_5 791 813 IPR000048 GO:0005515
Gabi2552g00010 968 Pfam IQ calmodulin-binding motif 817 836 IPR000048 GO:0005515
Gabi2552g00010 968 Pfam IQ calmodulin-binding motif 794 812 IPR000048 GO:0005515
Gabi2552g00010 968 ProSiteProfiles Ankyrin repeat region circular profile. 616 642 - -
Gabi2552g00010 968 Gene3D - 553 720 IPR036770 -
Gabi2552g00010 968 MobiDBLite consensus disorder prediction 23 71 - -
Gabi2552g00010 968 Gene3D Immunoglobulins 376 471 IPR013783 -
Gabi2552g00010 968 FunFam Calmodulin-binding transcription activator 2 791 839 - -
Gabi2552g00010 968 FunFam Calmodulin-binding transcription activator 2 557 742 - -
Gabi2552g00010 968 SUPERFAMILY Ankyrin repeat 567 677 IPR036770 -
Gabi2552g00010 968 SMART ANK_2a 655 684 IPR002110 GO:0005515
Gabi2552g00010 968 SMART ANK_2a 616 645 IPR002110 GO:0005515
Gabi2552g00010 968 SMART ANK_2a 583 612 IPR002110 GO:0005515
Gabi2552g00010 968 Pfam IPT/TIG domain 383 461 IPR002909 -
Gabi2552g00010 968 ProSiteProfiles Ankyrin repeat profile. 616 648 IPR002110 GO:0005515
Gabi2552g00010 968 Pfam Ankyrin repeats (3 copies) 588 677 IPR002110 GO:0005515
Gabi2552g00010 968 ProSiteProfiles IQ motif profile. 815 839 IPR000048 GO:0005515
Gabi2552g00010 968 ProSiteProfiles CG-1 DNA-binding domain profile. 1 23 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00010 Gabi-Chr2552 38724 46500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00010 1 932 CAMTA Transcription Factor Family AT5G64220 49.787 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00010 K21596 - gmx:100818124 1497.64