Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00008 ATGGCGGAGCGTGCTTCTTACGAATTGGGTCCTCGATTAGATTTTCAGCAGTTACAAGTTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCGCAACAGAACCTCATAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTGAGATACTTTAGAAAAGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCACATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTTTTTGTTCACTACTTGGAAGTTAAGGGTAACAAGACAAATATTGGAGGAGTTACCGATAGTGATGAGGTCACATCAGATTCCCAAAAGGTTACCTCTCCATCGTATGGCTTTCCCTCAAATTATAGCAGTGTACCTTCACCGAGTACCGATTCCATGAGCCCAACTAGCAGTTTGACATCTTTACGTGAAGATGCTGATTCTGAGGATATTCACCAAACAAGTTCTGGATTACGCCCATTACTTGAGTCGCAACAAATGGGGAATGGTCGTCCTCTGGCGGAAAAGGTTGATTCTGGTCCAAACAGTTCATATCTTATGCATCCCTTTTCAGGTAATCATGGACATTCATCAATTTCTGGAACGGATTATATCCCACCTGTTCACAGGGATAAATTTAGAGGAAATGATGCTACTTATATTGATCGCCAGAAAGCACATGGCATGACATCCTGGGACACTGTCTTGGAGCAATGCTCTGCAGAATTGCATAGCGATCCTTCTGTTGTATCATTTCCTTCCATGCCATCTAGTTCAATGAGAAATATCCTTGAACAAGAGCATACCATTTTGGGTGGTCTTTTAGAGAGCAAAAGTGGTCTCACTGAGGAAGCAGGGAGCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGACATATGCTGACCTTAACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGTCCCTAGTTTACTGGGGAATGAAACTCATAATGCCAGTTCTGAAATTGCTCCTGTCCTATTTAGTTTTTCTGGTGAGCCAAAAGAGCAGCTTGTGCAGCAAAACTATCCAGAACAGCATGCTGATGGACATTCTCAGGATGCACTATCTGCAAATAAAGTTCCTGGTGAAGAAAGTATCAGCTATGCCTTAACTATGAAGCGCACATTATTGGATAGAGATGGTAGCTTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTCGGAGATGTGGATGATTTGAATATGCAGTCCTCATCTGGTATTTCGTGGAGTACAGATGAATGTGGACATGTGATAGATGATACCTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTAGCATTATTGATTTTTCGCCTAAATGGGCTTTTGCTGAATCGGAAATTGAGGTGTTAATTATTGGATCATTTTTGAAGAGTGAACCGGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAATTGGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCGCCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTACAGAGAGGGCTTTTCTGGAAATGTAGATTTTGCAGATTTTTGTAACAGTTCAACTGAAATGCTGCTTCATTCTCGGCTGGAGGAGTTGCTTTCTTTAAAACCAGTGAACCCTTCAAATCAAAACTTTGAGGGTTATATGGAGAAAGGAAAGTTAATTTTTAAGCTTATTTCCCTGAGGGAGGAAGAAGAATATACGAGTAAGGAAGGAGAGCTTATAGAGATGGATATATCGCAACAAAAGGTGAAGGAGCATCTGTTTCACAGGCAGGTTAAGGAGAGGCTGTACTCATGGCTTCTTCACAAAATAACTGAGAGTGATAAAGGGCCAAATGTATTAGATAAGAATGGGCAAGGTGTCCTACATTTAGCAGCTGTTCTTGGTTATGATTGGGCCATAAAACCAATTTTATCCGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACATTGGGCGGCATCCTGTGGCAGGGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCAGATTCTGGAGCATTGACGGATCCATCTCCAGCATTTCCTTCAGGTAGAACACCTGCAGATCTTGCCTCTAACAATGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTCTTCATTAACTAGCCACCTCGAATTCCTCACAATGGATGATCAACATAACGGTGGTAGGGAAGAAATTTCAGGAATAAAAGCAGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTACTCTATGGTGATATGCCAGATGCCCTCTGCCTTAAGGATTCTCTTACTGCTGTCCGCAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAATATGAAGATGATGAGTTTGGATTGTCAGATCAGCTAGCTCTTTCCCTTCTAGCTTCTAAGGCGCATAAATCTGGACAAGGAGACGGTTTAGCCAATGCTGCAGCTGTACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACGATAATCTGGTCTGTGGGAATCCTGGAGAAGGTAATATTACGCTGGAGACGTAAGGGTAGTGGTTTACGTGGATTTCGACCAGAAGCCCTTAATAAGGTCCCCAGTCAAGAAAATGATCCTCCGAAAGAGGATGACTATGATTATCTTAAGGAAGGACGGAAACAAAGTGAGGAAAAGATCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAGTACCGGCGGCTGCTAAATGTTGTCGAGGACTTCCGTCAAACCAAGGCATGTAATATGGGTTTGATTAGTTCTGAAGAGACAGTTGATGGCGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3261 0.4232 MAERASYELGPRLDFQQLQVEAQHRWLRPAEICEILRNYRMFHIATEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKTNIGGVTDSDEVTSDSQKVTSPSYGFPSNYSSVPSPSTDSMSPTSSLTSLREDADSEDIHQTSSGLRPLLESQQMGNGRPLAEKVDSGPNSSYLMHPFSGNHGHSSISGTDYIPPVHRDKFRGNDATYIDRQKAHGMTSWDTVLEQCSAELHSDPSVVSFPSMPSSSMRNILEQEHTILGGLLESKSGLTEEAGSSQSLQSNWQIPFEDNSGHMLTLTQSLGLEFGSDYVPSLLGNETHNASSEIAPVLFSFSGEPKEQLVQQNYPEQHADGHSQDALSANKVPGEESISYALTMKRTLLDRDGSLKKVDSFSRWITKELGDVDDLNMQSSSGISWSTDECGHVIDDTSLSPSLSQDQLFSIIDFSPKWAFAESEIEVLIIGSFLKSEPEVTTCNWSCMFGELEVPAEVLANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGFSGNVDFADFCNSSTEMLLHSRLEELLSLKPVNPSNQNFEGYMEKGKLIFKLISLREEEEYTSKEGELIEMDISQQKVKEHLFHRQVKERLYSWLLHKITESDKGPNVLDKNGQGVLHLAAVLGYDWAIKPILSAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADSGALTDPSPAFPSGRTPADLASNNGHKGISGFLAESSLTSHLEFLTMDDQHNGGREEISGIKAVQTVSERTATPVLYGDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDDEFGLSDQLALSLLASKAHKSGQGDGLANAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRPEALNKVPSQENDPPKEDDYDYLKEGRKQSEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACNMGLISSEETVDGVEDLIDIDMLLDDDNFIPIAFD 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00008 1086 ProSiteProfiles Ankyrin repeat region circular profile. 734 760 - -
Gabi2552g00008 1086 SUPERFAMILY E set domains 501 587 IPR014756 -
Gabi2552g00008 1086 SMART ANK_2a 773 802 IPR002110 GO:0005515
Gabi2552g00008 1086 SMART ANK_2a 734 763 IPR002110 GO:0005515
Gabi2552g00008 1086 SMART ANK_2a 701 730 IPR002110 GO:0005515
Gabi2552g00008 1086 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1048 - -
Gabi2552g00008 1086 FunFam Calmodulin-binding transcription activator 2 909 957 - -
Gabi2552g00008 1086 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gabi2552g00008 1086 Gene3D - 910 957 - -
Gabi2552g00008 1086 MobiDBLite consensus disorder prediction 144 189 - -
Gabi2552g00008 1086 FunFam Calmodulin-binding transcription activator 2 675 860 - -
Gabi2552g00008 1086 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Gabi2552g00008 1086 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Gabi2552g00008 1086 Gene3D - 671 838 IPR036770 -
Gabi2552g00008 1086 ProSiteProfiles IQ motif profile. 933 957 IPR000048 GO:0005515
Gabi2552g00008 1086 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gabi2552g00008 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 960 IPR027417 -
Gabi2552g00008 1086 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gabi2552g00008 1086 Pfam IPT/TIG domain 501 579 IPR002909 -
Gabi2552g00008 1086 Pfam IQ calmodulin-binding motif 935 954 IPR000048 GO:0005515
Gabi2552g00008 1086 Pfam IQ calmodulin-binding motif 912 930 IPR000048 GO:0005515
Gabi2552g00008 1086 Pfam Ankyrin repeats (3 copies) 706 795 IPR002110 GO:0005515
Gabi2552g00008 1086 ProSiteProfiles IQ motif profile. 910 939 IPR000048 GO:0005515
Gabi2552g00008 1086 ProSiteProfiles Ankyrin repeat region circular profile. 701 732 - -
Gabi2552g00008 1086 SMART iq_5 909 931 IPR000048 GO:0005515
Gabi2552g00008 1086 SMART iq_5 932 954 IPR000048 GO:0005515
Gabi2552g00008 1086 SUPERFAMILY Ankyrin repeat 685 795 IPR036770 -
Gabi2552g00008 1086 Gene3D Immunoglobulins 494 589 IPR013783 -
Gabi2552g00008 1086 FunFam Calmodulin-binding transcription activator 2 494 590 - -
Gabi2552g00008 1086 MobiDBLite consensus disorder prediction 144 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00008 Gabi-Chr2552 36356 46501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00008 1 1050 CAMTA Transcription Factor Family AT5G64220 53.693 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi2552g00008 CG-1 1.8e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00008 K21596 - gmx:100818124 1726.06