Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00007 ATGTCTTCTTCTCCAATTCCAGTTCCGATTGGAATTGCAATGGATTCTGCTTTTTCTGTCACAGCGACGATGGCGCTTTTCAAACCTCTCAACAACCATTACGCCATAGTCAGAACCAGGCCACTCCTCCAGCTCCGTCGCCGCCTTAACTCCTGCCCTTCTATTATGCCTTTGCGGTGCTCAGCTGCTTCTTCCGGCGGCGGCGGCGACGATTCCATTATTATTCTCCATGTTGGGGGAATGATGTGCGAGGGATGTGCAGCTAACGTCAAAAGAATTCTAGAAAGTCGACCACAAGTGTCATCTGCTACTGTGAATCTAACATCCGAGATAGCAATAGTTTCGCCTGTATCTGAAGAAAAAACTGCACCAAATTGGCAGAACCGATTAGGGGAGGCACTTGCACAGCATTTAACTAGCTGTGGTTTCAGTTCTAGCCTTCGAGGTCAGGAAGATAGCGACTGA 465 0.4839 MSSSPIPVPIGIAMDSAFSVTATMALFKPLNNHYAIVRTRPLLQLRRRLNSCPSIMPLRCSAASSGGGGDDSIIILHVGGMMCEGCAANVKRILESRPQVSSATVNLTSEIAIVSPVSEEKTAPNWQNRLGEALAQHLTSCGFSSSLRGQEDSD 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00007 154 ProSitePatterns Heavy-metal-associated domain. 78 107 IPR017969 GO:0046872
Gabi2552g00007 154 ProSiteProfiles Heavy-metal-associated domain profile. 72 146 IPR006121 GO:0046872
Gabi2552g00007 154 Gene3D - 74 150 - -
Gabi2552g00007 154 CDD HMA 78 146 IPR006121 GO:0046872
Gabi2552g00007 154 SUPERFAMILY HMA, heavy metal-associated domain 72 121 IPR036163 GO:0046872
Gabi2552g00007 154 FunFam Copper-transporting ATPase PAA1, chloroplastic 72 147 - -
Gabi2552g00007 154 Pfam Heavy-metal-associated domain 76 143 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00007 Gabi-Chr2552 31611 34469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00007 73 148 Primary Pumps ATPases AT4G33520 67.105 1.21e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00007 - K17686 gmx:100527143 157.532