Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2552g00004 ATGTCTCACTTCGGAAGGTGGGGTCCACCGGATATCAGCGACACATACTCTCTGCTGGTTCTCAACATCGCCTTTCGTACAACCGCCGACGACCTTTTCCCTCTCTTTGATAAGTATGGTAAGGTCGTCGATATCTTCATCCCCAGAGATCGAAGGACCGGCGATTCCAGGGGCTTCGCTTTCGTCCGTTACAAGTACGCCGACGAGGCTCAGAAAGCCGTCGACAGGCTCGACGGCAGAGTCGTCGATGGCCGGGAAATAACTGTCCAGTTCGCTAAATATGGCCCTAATGCTGAGAGAATTTCAAAAGGAAGGGTTGTTGAACCATTGCCGAGATCTAGTAACAGGTCAAGGAGCCGCAGTCCTCCAAGGAGAAGGTATCGCGATGATCACAGGGATAATAGGAGTCATGAACGTGACAGGTACCGTTCAAGAAACGACAGAGATTATCGTCGTCGAAGCCGGAGTCACTCACCGGATAGTCGAAAAAGTACTTCTCCGAGGAAGAAGAGCCGTCATGGACGGTCACCTACACCTGCCAGTGTCTCTCCACGCCCTCGACCTGATGATGCTTCCCCGAGGATATCCCCTCCAAATTCTGGTGGTGATGAATGA 615 0.522 MSHFGRWGPPDISDTYSLLVLNIAFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERISKGRVVEPLPRSSNRSRSRSPPRRRYRDDHRDNRSHERDRYRSRNDRDYRRRSRSHSPDSRKSTSPRKKSRHGRSPTPASVSPRPRPDDASPRISPPNSGGDE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2552g00004 204 SMART rrm2_1 17 90 IPR003954 GO:0003676
Gabi2552g00004 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Gabi2552g00004 204 Gene3D - 10 178 IPR012677 -
Gabi2552g00004 204 SMART rrm1_1 17 90 IPR000504 GO:0003723
Gabi2552g00004 204 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 175 - -
Gabi2552g00004 204 MobiDBLite consensus disorder prediction 102 204 - -
Gabi2552g00004 204 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Gabi2552g00004 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Gabi2552g00004 204 CDD RRM_SRSF2_SRSF8 18 90 - -
Gabi2552g00004 204 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Gabi2552g00004 204 MobiDBLite consensus disorder prediction 123 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2552g00004 Gabi-Chr2552 19311 21733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2552g00004 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 3.20e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2552g00004 K12891 - han:110941083 220.705