Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2549g00016 ATGGCAAAGTACTATGACATTGATGATATTATCACGGAGGAAGAGATTGTGTCAGTTATGTTTCAGAAGGCAGCATCTGGAGTGGGAATAGATCCCAGTTCTGAGACGGACTTTATTGAAGCAGGCTCAAAAGTTGAACTGCCTTTTTGGCTTGCTCGTGAGTTACAGTTGAGACAAGCAGTATCAGTCAATGTTCCTTCTTGTTTCAATCAAAAAACAAGGTTAGAGATCCAAGCTGATTCTGCATATGTAGATTTGAGGTCCAGATGTCCATTCTTTTATGAATTTGGTTGCAAGATAGCACCTATAGTTGCCGATAGAACCATCGGGTTTCTGTTGTTGTCTGCATTTCAGAGTAGGTATAAGGAAGTCCTCACTAAGGCACATAGTTCAGCATTTGCTGCTGGTTCCAAATTCTGGACTATTCTGACAAAAGAGGAGATCAATTTGTATGAGACAGCTCAATCCGCAATGGCATCCTTCAAGAAATGGCGAATGGGGGGACCCATGTTTCAGATAGCTTCTGTTCTGAGAAGAAAGAGAAAATCAAATGAATAG 558 0.4104 MAKYYDIDDIITEEEIVSVMFQKAASGVGIDPSSETDFIEAGSKVELPFWLARELQLRQAVSVNVPSCFNQKTRLEIQADSAYVDLRSRCPFFYEFGCKIAPIVADRTIGFLLLSAFQSRYKEVLTKAHSSAFAAGSKFWTILTKEEINLYETAQSAMASFKKWRMGGPMFQIASVLRRKRKSNE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2549g00016 185 PANTHER UNCHARACTERIZED 1 183 IPR010492 -
Gabi2549g00016 185 Pfam GINS complex protein 45 148 IPR021151 -
Gabi2549g00016 185 Gene3D - 2 166 IPR038437 -
Gabi2549g00016 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
Gabi2549g00016 185 CDD GINS_B_Psf3 4 66 - -
Gabi2549g00016 185 SUPERFAMILY PriA/YqbF domain 2 66 - -
Gabi2549g00016 185 CDD GINS_A_psf3 61 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2549g00016 Gabi-Chr2549 271761 281481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2549g00016 1 184 Core DNA Replication Machinery Family AT3G55490 66.848 7.29e-95 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2549g00016 K10734 - gmx:100799874 306.605