Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2549g00011 ATGTTGAGAGACGAAAGCGTGGGTTCAATAAGCGCGAGGCACAGCGCTACCACCGTCTCTGCGGTGTCGAATAAGGTTCTGGTGGCCGTGAAGGCGGAGAAGGTGATCTCCAACACCGCATTAGCATGGGCACTCACTCATGTCGTTCACTCCAGCGACTCCATCACGCTGCTCGCCGTGCATTCCGCCGATAAAACTGGCCGAAGATTCTGGAACTTTTCGAGACTGGCTTTAGACTGTGCGATCGGAAACACGGGAAAATTGCCGGAGGGGATTTCTGATATCTCCGAGTCTTGCGCTCAGATGGTGCTTCAGTTGCACAATCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTCACAGGTACTCCCAGTGGTGCTGTGGCGGCTGAAGCGAGATGGAGTGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTAAAGCATTGCATGGATGAACTCAACTGTAGCATTGTGGTGATGAATGGCTCACAGCCAAAAGTCCTCAGGCTTAACTTAGGGTGCTCCAATGAAATGCAAACTCCTTTTTTCTCTGCTTCTTCTTCACCAGGTAAAGAAATTGGAAGGCTAAAAGGTCGCAGATTGAAGCATTCCACTCCAGTGAGTAGTCCTGAAGCAGCAGGTTCTTCTATTACAAGAAACATGGGAGAAAATTCGGTGTCAAGTTCTGACTCAACGACTCCTCTTTTCCTAGTCTATGAACAAAACCCTCTGTACGAGGGTCAGGGACAACACAAAAGAACACACAAACCAATCAACAAGCCAAAAGATTTCAACGTTCAGCCACCATTATACTTTAATTTGGAAAGGGATCGCCCTCTCACTTCTTGGACAAGCCCAACATCATCTGTGGCTAGTGATAACAAGACTGTACTCTGGATTCCTCAAAACCACATTGTAAATGACAAGCTTCAAAAAACTGAAAACAAGAGAATTATCCAAAGAACTAAATCTCCAACTTCTAAAACTTTACTTGAGAATTTTATTCATTGTGATCAAGAAATGAGGACATTTGAACTTGGGTTTAACCAAGCTCAGAGTAGAAGTTATGTAGCCAACTCGGGCGTCAGAGATAATGCCATTCCTTTGGGTAGAACTTCCTCTATACCTCCTCCCTTATGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCTAGACGGTTTTCTTACAAAGAGCTAGAAGAAGCTACTGATATGTTCTCAGATGTGAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAAGGGAAAACTCGAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAGTTCAGTGGCTCTCAAGCAGATCTTGATTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCACAACACAGAAATGTTGTATTGTTGATCGGATTTTGTACAGAGGGAAATTTGAGGATATTAGTCTATGAGTACATATGCAACGGATCCTTGGACCTCTACTTACATGGAGAAGAGATTATGTCTTTGGATTGGAACTCACGCCTAAAGATAGCGATCGGAGCTGCACGAGGCTTACGGTACCTTCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACTTTCGACCTAAAAACATCCTCTTAACCCATGACTTCGAACCTCTGGTGGCTGATTTTGGGCTTGCAAGATGGCAATCAGAATGGAACATAAATTCTGAAGATCGCGTTATAGGAACTTCCGGGTATCTTGCACCGGAGTATCTTGATACTGGAAATCTTACGTATAAAGTCGATGTGTATGCATTTGGAATAGTTTTATTAGAGTTAATAACAGGTCGAAGAATTAGTGAGTTGGAACAGTTCGATGGACACTCCTATCTTTCTGAATGGTTTCACCCGCTACGCATGTTAGAAGCCAATCATATCATGCAAAACCTTCGATCTCTCAATCCATGTTTGGATTCTGAGGCGTCACTGGAATTTAATCTTCAATTGCAGGCCATGACACGGGCTGCTTCACTGTGTCTACGTCTGGACCCTGATGCCAGACCCCCAATGTCAAAGATCCTCAGAGTGCTGGAAGGGGGCGATCCAGTTCGTCCTAGGGGTTTATTAGAAGGTTTAGACATGAATTCGGTTGGTAACAGAAGTGGCCATTTAAGTGGTTTAACTTCGCACGCTACACCTAAAGGTACAATAAGTCATTCCCGTAGGTTATCACATTGA 2217 0.4434 MLRDESVGSISARHSATTVSAVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVHSADKTGRRFWNFSRLALDCAIGNTGKLPEGISDISESCAQMVLQLHNQIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCSIVVMNGSQPKVLRLNLGCSNEMQTPFFSASSSPGKEIGRLKGRRLKHSTPVSSPEAAGSSITRNMGENSVSSSDSTTPLFLVYEQNPLYEGQGQHKRTHKPINKPKDFNVQPPLYFNLERDRPLTSWTSPTSSVASDNKTVLWIPQNHIVNDKLQKTENKRIIQRTKSPTSKTLLENFIHCDQEMRTFELGFNQAQSRSYVANSGVRDNAIPLGRTSSIPPPLCSQCQNKAPVFGKPPRRFSYKELEEATDMFSDVNFLAEGGFGVVHKGKLEDGQVVAVKQLKFSGSQADLDFCREVRVLSCAQHRNVVLLIGFCTEGNLRILVYEYICNGSLDLYLHGEEIMSLDWNSRLKIAIGAARGLRYLHEDCRVGCIVHRDFRPKNILLTHDFEPLVADFGLARWQSEWNINSEDRVIGTSGYLAPEYLDTGNLTYKVDVYAFGIVLLELITGRRISELEQFDGHSYLSEWFHPLRMLEANHIMQNLRSLNPCLDSEASLEFNLQLQAMTRAASLCLRLDPDARPPMSKILRVLEGGDPVRPRGLLEGLDMNSVGNRSGHLSGLTSHATPKGTISHSRRLSH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2549g00011 738 PANTHER OS01G0750732 PROTEIN 152 693 - -
Gabi2549g00011 738 SUPERFAMILY Protein kinase-like (PK-like) 392 690 IPR011009 -
Gabi2549g00011 738 ProSiteProfiles Protein kinase domain profile. 412 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2549g00011 738 FunFam Os07g0541700 protein 488 576 - -
Gabi2549g00011 738 Pfam Protein tyrosine and serine/threonine kinase 418 688 IPR001245 GO:0004672|GO:0006468
Gabi2549g00011 738 MobiDBLite consensus disorder prediction 713 738 - -
Gabi2549g00011 738 Gene3D Phosphorylase Kinase; domain 1 384 487 - -
Gabi2549g00011 738 ProSitePatterns Tyrosine protein kinases specific active-site signature. 533 545 IPR008266 GO:0004672|GO:0006468
Gabi2549g00011 738 MobiDBLite consensus disorder prediction 211 233 - -
Gabi2549g00011 738 MobiDBLite consensus disorder prediction 200 233 - -
Gabi2549g00011 738 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 384 487 - -
Gabi2549g00011 738 Gene3D Transferase(Phosphotransferase) domain 1 488 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2549g00011 Gabi-Chr2549 186736 193259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2549g00011 387 686 Trihelix Transcription Factor Family AT1G68690 45.515 4.60e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi2549g00011 PK_Tyr_Ser-Thr 6.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2549g00011 - - gmx:100813141 1252.27