Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2549g00008 ATGTTCACTAATTCGAACACAGTAATGCGAACCTTATCACCTTTATCAGAACCAGACCTCTCCTTAAACATAAGCCCTCCTTCTATTTCAGATTCTGAAGCCAAAGAAGTGGGAAGCTACAACGTATTAAATAGGAAACCACTTTACAACGACATGTGCTCAACCTCTGATTCAGTTAGTAGTGGAAGTGATTTAAGCCATGAGAATGGTTTGTTCAACCCCGACACTGTCTATAACCTTGGTCATCATGAGCCAACATTGAGATTAGGATTTGGAACAACAAATTTGAATCATCCTCATATTCCAGCACAACAAGGACTCTCTAGAAACTTCAATCACCACAATATCCAACCTCACATCTATGGCCGAGATTTCAAGCGAAATACAAGAGCCATTAATGGTGTCAAAAGAAATGTCAGAGCTCCTAGGATGAGATGGACGACAACCCTCCATGCCCATTTTGTTCATGCGGTTCAGCTTCTTGGTGGTCATGAAAGGGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAAGTACTGGTCATGGGCACACAGATATTGGCTTGAACCGAAGTCCAGGAATTGTTCATCTGCATGGAGGAGTCTCAGCTTCTGAGAGAGTCAATTTACCACAAGCGCTGCAAAAATCACAATGGACATCGTGGCAATCATCAATGGAGACAAATACAAACAATAGTAGACAAAAACCGGACATCAGTTTGACGTATTCTCACCTCAAAGGAAATGAAACCACGGTGGTTGAGGAGAATTATGGAGGCATGTCGAATTGCATGAAGGAGAGGCTGGATTTTACACCTTTGTCACGTTCTGATGCGAAGCTTGACCTAGAATTCACGCTTGGAAGGCCCAATTGGCAAACAGACCATGGCGAATCATCAAGAGAGTTAACTCTTCTCAAGTGTTGA 996 0.4257 MFTNSNTVMRTLSPLSEPDLSLNISPPSISDSEAKEVGSYNVLNRKPLYNDMCSTSDSVSSGSDLSHENGLFNPDTVYNLGHHEPTLRLGFGTTNLNHPHIPAQQGLSRNFNHHNIQPHIYGRDFKRNTRAINGVKRNVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTGHGHTDIGLNRSPGIVHLHGGVSASERVNLPQALQKSQWTSWQSSMETNTNNSRQKPDISLTYSHLKGNETTVVEENYGGMSNCMKERLDFTPLSRSDAKLDLEFTLGRPNWQTDHGESSRELTLLKC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2549g00008 331 FunFam Myb family transcription factor 140 198 - -
Gabi2549g00008 331 SUPERFAMILY Homeodomain-like 139 196 IPR009057 -
Gabi2549g00008 331 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 319 IPR044847 GO:0000976|GO:0006355|GO:0010158
Gabi2549g00008 331 NCBIfam myb-like DNA-binding domain, SHAQKYF class 142 195 IPR006447 GO:0003677
Gabi2549g00008 331 Gene3D - 141 198 - -
Gabi2549g00008 331 Pfam Myb-like DNA-binding domain 143 194 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2549g00008 Gabi-Chr2549 132405 135440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2549g00008 16 209 G2-like Transcription Factor Family AT5G42630 57.360 9.48e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi2549g00008 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2549g00008 - - gmx:106795723 416.387