Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2549g00007 ATGGGAGAAAAAAACTGTGATAGCTGCAGATCGTGGGTGGACGAAATTTACTGGACCCATTTTCAATTCCTGCAGTTCGCTCAATTTCTCCGTGGCAGTTACGATCAACAACTTGCACTCCCTAAAACATTTTCAGATAATTTAAAGAAGAAGCTGCCAGGAAATGTGACCCTTAGAGGTCCTGGTGGGATTGTGTGGAATATAGGATTGATGACTAGAGATGATACCTTGTACTTCACGAATGGTTGGCAACAATTTGTGAAGGATCACTCTCTGAAAGAGAATGATTTCCTTGTCTTCAAGTACAATGGTGAATCTTTGTTTGATGTTTTAATATTTGATGGGGAGAGCTACTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAATGTGGGCATGCTGAAGATTGGGGTGGATGTTTCAGCAAGAGAAGAGATGTAGATAATTCCTTGAAAGAAGTTAATACCCCTTCTAATGCTGGTGTTGAATGTGCTTATCCTAAAAAATATGTGCATCTTAACAGTGACAAAGTGCCATTAGCTGTACCCTTGGAAACTCCTACTGAAAAAACTTTCAATGCTGGTGTTGAATGTGCTTATCCTAAAAAGTATGTGCATCTTAACAGTGACAAAGTGCCATTAGCTGCACCCTTGGAAACTCCTACTGAAAAAACTTTCAATGCTGGTGTTGAATGTGCTTATCCTAAAAAATGTGTGCATCTTAACAGTGACAAAGTGCCATTAGCTGAACCCTTGGAAACTCCTACTGAAAAAACTTTCAATGCTGGTGTTGAATGTGCTTATCCTAAAAAATATGTGCATCTTAACAGTGACAAAGTGCCATTAGCTGTACCCTTGGAAACTCCTACTGAAAAAACTTTCAATGCTGGAGTTGAATCAGCTTGCCCTGAGGAAGTCATGGCTGATGGATTTACCGAGCCTGCAGCTGTTCCCTCCCAACCTAACGGTAAAAGGACCAGGAAGGTAGTTTCTGCTGTTAAACAGGTCCAGATTAAGCAGAGAGGAAAACTGCCAAAAGTATCCAATTCTCATGATACAGCACTTAACTGGGAGACTGAATCTGAACTTGATTCTGTGGCTAAAACTGTGACAAATGAACTATATACCTCAAATAGAAGACCTGTCACAGAAAATGAGAAGAAAAATGCCCTCCAGTTGGCCCAGGAAACATGTTCCATTGACAGCTTGTACGTAGTTATGCGACCGACACACGTATACAGGAGATTCTTCGTGTCAATCCCTAATAAGTGGATAATAGAACATCTCTCTGCAAGATCTCAAGATGTGATATTACGCATGGGTAATGCTGAATGGACTGTCAGATACAACTTTCGTAATTTTCGTCAAATGGGAGGACTTCTTGGTGGGTGGAAACGTTTTTCCTTGGAAAATAACCTTGAAGAGTATGATGTTTGTGTGTTTACACCAGCAGGCCAAATCAACGACACATTTATCTTGGATGTGAACATTTTCAGAGTTGTTGAGGAGATTGTTCTTCTGACTGCTGTGAATTCTCCAGAAAAAAGGGGTAGGAAAAAACTAATCAAGGCCATTTAG 1575 0.4038 MGEKNCDSCRSWVDEIYWTHFQFLQFAQFLRGSYDQQLALPKTFSDNLKKKLPGNVTLRGPGGIVWNIGLMTRDDTLYFTNGWQQFVKDHSLKENDFLVFKYNGESLFDVLIFDGESYCEKAASYFVRKCGHAEDWGGCFSKRRDVDNSLKEVNTPSNAGVECAYPKKYVHLNSDKVPLAVPLETPTEKTFNAGVECAYPKKYVHLNSDKVPLAAPLETPTEKTFNAGVECAYPKKCVHLNSDKVPLAEPLETPTEKTFNAGVECAYPKKYVHLNSDKVPLAVPLETPTEKTFNAGVESACPEEVMADGFTEPAAVPSQPNGKRTRKVVSAVKQVQIKQRGKLPKVSNSHDTALNWETESELDSVAKTVTNELYTSNRRPVTENEKKNALQLAQETCSIDSLYVVMRPTHVYRRFFVSIPNKWIIEHLSARSQDVILRMGNAEWTVRYNFRNFRQMGGLLGGWKRFSLENNLEEYDVCVFTPAGQINDTFILDVNIFRVVEEIVLLTAVNSPEKRGRKKLIKAI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2549g00007 524 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Gabi2549g00007 524 Pfam B3 DNA binding domain 405 497 IPR003340 GO:0003677
Gabi2549g00007 524 Gene3D - 380 502 IPR015300 -
Gabi2549g00007 524 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Gabi2549g00007 524 SMART B3_2 26 116 IPR003340 GO:0003677
Gabi2549g00007 524 SMART B3_2 403 500 IPR003340 GO:0003677
Gabi2549g00007 524 SUPERFAMILY DNA-binding pseudobarrel domain 22 114 IPR015300 -
Gabi2549g00007 524 CDD B3_DNA 405 498 IPR003340 GO:0003677
Gabi2549g00007 524 CDD B3_DNA 37 114 IPR003340 GO:0003677
Gabi2549g00007 524 SUPERFAMILY DNA-binding pseudobarrel domain 402 484 IPR015300 -
Gabi2549g00007 524 Gene3D - 20 119 IPR015300 -
Gabi2549g00007 524 ProSiteProfiles B3 DNA-binding domain profile. 402 500 IPR003340 GO:0003677
Gabi2549g00007 524 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 502 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2549g00007 Gabi-Chr2549 74580 78558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2549g00007 381 498 REM Transcription Factor Family AT4G33280 36.441 3.75e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2549g00007 B3 6.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2549g00007 - - lang:109347655 509.605