Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2549g00006 ATGGGAGAAAAAAACTGTGATAGCTGCAGATCGTGGGTGGACGAAATTTACTGGACCCATTTTCAATTCCTGCAGTTCGCTCAATTTCTCCGTGGCAGTTACGATCAACAACTTGCACTCCCTAAAACATTTTCAGATAATTTAAAGAAGAAGCTGCCAGGAAATGTGACCCTTAGAGGTCCTGGTGGGATTGTGTGGAATATAGGATTGATGACTAGAGATGATACCTTGTACTTCACGAATGGTTGGCAACAATTTGTGAAGGATCACTCTCTGAAAGAGAATGATTTCCTTGTCTTCAAGTACAATGGTGAATCTTTGTTTGATGTTTTAATATTTGATGGGGAGAGCTACTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAATGTGGGCATGCTGAAGATTGGGGTGGATGTTTCAGCAAGAGAAGAGATGTAGATAATTCCTTGAAAGAAGTTAATACCCCTTCTAATGCTGGTGTTGAATGTGCTTATCCTAAAAAATATGTATCCTGGGTGGAGGACATTTACTGGACCCATTTTCAATTTCTCCATTTCACCCAATTTCTCGGTCCTGGTTATGTTCAATGCCTTGCGCTTCCCAAAACATTCTCACATAATCTGAAGAAGAAGTTGCCGGAAAATGTGGCCCTTAGGGGTCCTGGTGGCGTTGTGTGGAATATAGGACTGACAACTAGAGATGATACCTTGTATTTCACGCAGGGTTGGCAACAATTTGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTAGTCTTTAAGTACAATGGTGATTCTTTGTTCGATGTTTTAATATTTGATGGGCAGAGCTGTTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAAATTGGGCATGCTGAAGATGAAGGTGGATGTTCCACCAAGAAGAGAAACACAGATAATTCCTTGGAGGAAGATGGTGAAAAGACTTATACTGGTGGTGTTGAATCTGCTTGCCCTGAGGAAGTTGAAGTTATGGCTGATGTGGTCACCGACCCGCCAGCAGCTACTCCCTTGAAAACTACCGGTAAAAGGACCAAGAAGCTAGTTTCTGCTATTAAGCATGTCCAGACTAAGCGGAGAGGAAAAACACCAAAAGCATCTACTTCTCTTGAGGGAGCATTGAACTGGGTGACTGAAGCTGACTCTGCATCTGTGGGTAAAATTGGGACAAGTGAATTATATACATCAAATAGAAGACCTATCACAGAAGATGAGAAGAAAAATGCGCTCGAGTTGGCCCAGGCAGCAAGTTCAAATGACGGTTTTTATGTAGTTATGCGACCCACACATGTATACAAGAGATTCTTCTTGTCAATCCCAAATAAGTGGATGAATGAACATTTCTCTCCAAGATCTCAAGATGTGATATTACGCATCATGGGTAAGGCTGAATGGATTGTCAAATATACCTATATTGCTAATCGTCGTAACGGAGGACTTACTGGTGGGTGGAAACATTTTGTTCTGGATAATAACCTTGAAGAGTTTGATGTCTGTGTGTTTAAACTAGGAGGCCAACTCAACAACACAATGATCTTGGAGGTGGACATTTTTAGAGTTGTTGAGGAGATTGCACCTCTGACTGCTGTGAATTCTCCAAGGGGTAGGAAAAAACTAACTTAA 1647 0.4123 MGEKNCDSCRSWVDEIYWTHFQFLQFAQFLRGSYDQQLALPKTFSDNLKKKLPGNVTLRGPGGIVWNIGLMTRDDTLYFTNGWQQFVKDHSLKENDFLVFKYNGESLFDVLIFDGESYCEKAASYFVRKCGHAEDWGGCFSKRRDVDNSLKEVNTPSNAGVECAYPKKYVSWVEDIYWTHFQFLHFTQFLGPGYVQCLALPKTFSHNLKKKLPENVALRGPGGVVWNIGLTTRDDTLYFTQGWQQFVKDHSLKENDFLVFKYNGDSLFDVLIFDGQSCCEKAASYFVRKIGHAEDEGGCSTKKRNTDNSLEEDGEKTYTGGVESACPEEVEVMADVVTDPPAATPLKTTGKRTKKLVSAIKHVQTKRRGKTPKASTSLEGALNWVTEADSASVGKIGTSELYTSNRRPITEDEKKNALELAQAASSNDGFYVVMRPTHVYKRFFLSIPNKWMNEHFSPRSQDVILRIMGKAEWIVKYTYIANRRNGGLTGGWKHFVLDNNLEEFDVCVFKLGGQLNNTMILEVDIFRVVEEIAPLTAVNSPRGRKKLT 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2549g00006 548 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Gabi2549g00006 548 MobiDBLite consensus disorder prediction 297 317 - -
Gabi2549g00006 548 ProSiteProfiles B3 DNA-binding domain profile. 183 276 IPR003340 GO:0003677
Gabi2549g00006 548 Gene3D - 408 531 IPR015300 -
Gabi2549g00006 548 SUPERFAMILY DNA-binding pseudobarrel domain 429 519 IPR015300 -
Gabi2549g00006 548 SUPERFAMILY DNA-binding pseudobarrel domain 181 278 IPR015300 -
Gabi2549g00006 548 CDD B3_DNA 37 114 IPR003340 GO:0003677
Gabi2549g00006 548 CDD B3_DNA 185 274 IPR003340 GO:0003677
Gabi2549g00006 548 ProSiteProfiles B3 DNA-binding domain profile. 430 529 IPR003340 GO:0003677
Gabi2549g00006 548 SMART B3_2 430 529 IPR003340 GO:0003677
Gabi2549g00006 548 SMART B3_2 186 276 IPR003340 GO:0003677
Gabi2549g00006 548 SMART B3_2 26 116 IPR003340 GO:0003677
Gabi2549g00006 548 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 138 IPR044837 -
Gabi2549g00006 548 CDD B3_DNA 430 527 IPR003340 GO:0003677
Gabi2549g00006 548 Gene3D - 180 279 IPR015300 -
Gabi2549g00006 548 Gene3D - 20 119 IPR015300 -
Gabi2549g00006 548 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Gabi2549g00006 548 Pfam B3 DNA binding domain 430 517 IPR003340 GO:0003677
Gabi2549g00006 548 Pfam B3 DNA binding domain 197 274 IPR003340 GO:0003677
Gabi2549g00006 548 SUPERFAMILY DNA-binding pseudobarrel domain 22 114 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2549g00006 Gabi-Chr2549 74580 98969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2549g00006 170 527 REM Transcription Factor Family AT4G33280 35.990 2.22e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2549g00006 B3 2.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2549g00006 - - tpra:123885991 652.514