Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2549g00006 | ATGGGAGAAAAAAACTGTGATAGCTGCAGATCGTGGGTGGACGAAATTTACTGGACCCATTTTCAATTCCTGCAGTTCGCTCAATTTCTCCGTGGCAGTTACGATCAACAACTTGCACTCCCTAAAACATTTTCAGATAATTTAAAGAAGAAGCTGCCAGGAAATGTGACCCTTAGAGGTCCTGGTGGGATTGTGTGGAATATAGGATTGATGACTAGAGATGATACCTTGTACTTCACGAATGGTTGGCAACAATTTGTGAAGGATCACTCTCTGAAAGAGAATGATTTCCTTGTCTTCAAGTACAATGGTGAATCTTTGTTTGATGTTTTAATATTTGATGGGGAGAGCTACTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAATGTGGGCATGCTGAAGATTGGGGTGGATGTTTCAGCAAGAGAAGAGATGTAGATAATTCCTTGAAAGAAGTTAATACCCCTTCTAATGCTGGTGTTGAATGTGCTTATCCTAAAAAATATGTATCCTGGGTGGAGGACATTTACTGGACCCATTTTCAATTTCTCCATTTCACCCAATTTCTCGGTCCTGGTTATGTTCAATGCCTTGCGCTTCCCAAAACATTCTCACATAATCTGAAGAAGAAGTTGCCGGAAAATGTGGCCCTTAGGGGTCCTGGTGGCGTTGTGTGGAATATAGGACTGACAACTAGAGATGATACCTTGTATTTCACGCAGGGTTGGCAACAATTTGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTAGTCTTTAAGTACAATGGTGATTCTTTGTTCGATGTTTTAATATTTGATGGGCAGAGCTGTTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAAATTGGGCATGCTGAAGATGAAGGTGGATGTTCCACCAAGAAGAGAAACACAGATAATTCCTTGGAGGAAGATGGTGAAAAGACTTATACTGGTGGTGTTGAATCTGCTTGCCCTGAGGAAGTTGAAGTTATGGCTGATGTGGTCACCGACCCGCCAGCAGCTACTCCCTTGAAAACTACCGGTAAAAGGACCAAGAAGCTAGTTTCTGCTATTAAGCATGTCCAGACTAAGCGGAGAGGAAAAACACCAAAAGCATCTACTTCTCTTGAGGGAGCATTGAACTGGGTGACTGAAGCTGACTCTGCATCTGTGGGTAAAATTGGGACAAGTGAATTATATACATCAAATAGAAGACCTATCACAGAAGATGAGAAGAAAAATGCGCTCGAGTTGGCCCAGGCAGCAAGTTCAAATGACGGTTTTTATGTAGTTATGCGACCCACACATGTATACAAGAGATTCTTCTTGTCAATCCCAAATAAGTGGATGAATGAACATTTCTCTCCAAGATCTCAAGATGTGATATTACGCATCATGGGTAAGGCTGAATGGATTGTCAAATATACCTATATTGCTAATCGTCGTAACGGAGGACTTACTGGTGGGTGGAAACATTTTGTTCTGGATAATAACCTTGAAGAGTTTGATGTCTGTGTGTTTAAACTAGGAGGCCAACTCAACAACACAATGATCTTGGAGGTGGACATTTTTAGAGTTGTTGAGGAGATTGCACCTCTGACTGCTGTGAATTCTCCAAGGGGTAGGAAAAAACTAACTTAA | 1647 | 0.4123 | MGEKNCDSCRSWVDEIYWTHFQFLQFAQFLRGSYDQQLALPKTFSDNLKKKLPGNVTLRGPGGIVWNIGLMTRDDTLYFTNGWQQFVKDHSLKENDFLVFKYNGESLFDVLIFDGESYCEKAASYFVRKCGHAEDWGGCFSKRRDVDNSLKEVNTPSNAGVECAYPKKYVSWVEDIYWTHFQFLHFTQFLGPGYVQCLALPKTFSHNLKKKLPENVALRGPGGVVWNIGLTTRDDTLYFTQGWQQFVKDHSLKENDFLVFKYNGDSLFDVLIFDGQSCCEKAASYFVRKIGHAEDEGGCSTKKRNTDNSLEEDGEKTYTGGVESACPEEVEVMADVVTDPPAATPLKTTGKRTKKLVSAIKHVQTKRRGKTPKASTSLEGALNWVTEADSASVGKIGTSELYTSNRRPITEDEKKNALELAQAASSNDGFYVVMRPTHVYKRFFLSIPNKWMNEHFSPRSQDVILRIMGKAEWIVKYTYIANRRNGGLTGGWKHFVLDNNLEEFDVCVFKLGGQLNNTMILEVDIFRVVEEIAPLTAVNSPRGRKKLT | 548 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2549g00006 | 548 | ProSiteProfiles | B3 DNA-binding domain profile. | 23 | 116 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | MobiDBLite | consensus disorder prediction | 297 | 317 | - | - | |
Gabi2549g00006 | 548 | ProSiteProfiles | B3 DNA-binding domain profile. | 183 | 276 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | Gene3D | - | 408 | 531 | IPR015300 | - | |
Gabi2549g00006 | 548 | SUPERFAMILY | DNA-binding pseudobarrel domain | 429 | 519 | IPR015300 | - | |
Gabi2549g00006 | 548 | SUPERFAMILY | DNA-binding pseudobarrel domain | 181 | 278 | IPR015300 | - | |
Gabi2549g00006 | 548 | CDD | B3_DNA | 37 | 114 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | CDD | B3_DNA | 185 | 274 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | ProSiteProfiles | B3 DNA-binding domain profile. | 430 | 529 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | SMART | B3_2 | 430 | 529 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | SMART | B3_2 | 186 | 276 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | SMART | B3_2 | 26 | 116 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 32 | 138 | IPR044837 | - | |
Gabi2549g00006 | 548 | CDD | B3_DNA | 430 | 527 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | Gene3D | - | 180 | 279 | IPR015300 | - | |
Gabi2549g00006 | 548 | Gene3D | - | 20 | 119 | IPR015300 | - | |
Gabi2549g00006 | 548 | Pfam | B3 DNA binding domain | 36 | 114 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | Pfam | B3 DNA binding domain | 430 | 517 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | Pfam | B3 DNA binding domain | 197 | 274 | IPR003340 | GO:0003677 | |
Gabi2549g00006 | 548 | SUPERFAMILY | DNA-binding pseudobarrel domain | 22 | 114 | IPR015300 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2549g00006 | Gabi-Chr2549 | 74580 | 98969 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2549g00006 | 170 | 527 | REM Transcription Factor Family | AT4G33280 | 35.990 | 2.22e-69 | 227 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Gabi2549g00006 | B3 | 2.5e-15 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2549g00006 | - | - | tpra:123885991 | 652.514 |