Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2549g00003 ATGGCCTGTGACTGTGAGGGAAAGTTAAATGTAAGAAGGCCTCACTTCTATGAGGTTTATTCCTCCACCTCCACCTCTGAAAAACTGAAAATTCCTGATGGATTCATCTGTCACATGGAGGGCAGGACGTGCGGATTAGTTTCGTTAACTGGTCCTAGTGGAAATACTTGGCGAGTTCAATTAATTAAGCAAAACAATGATCTTTTCTTCTGTCATGGATGGCCAACATTTGTGGTAGATCATTGTTTAGAATGTGGTGACCTTTTGGTTTTCAGATACAAGGGTCACTTGCATTTTACTGTGCAAGTATTCGACAAGAATGCTTGTGAGAAAGAAGCAGCATTTCATTCTGAATGCAGTCAAAATTCATGCAACTTTGATAATGTCAAAGGACAGAAAAGAGATAGTAAGGAGAATTCTTCTTTGGATGTTGTTGAAAGTGTTTCAAAGAAAATGAGAAGTAGTGCCATTGAGAACCACGAGCTTGGGCTGGGTATTGTTCGTAAAGAACTCTCCCAGTATGAGATTGTAAAACCAATTAGTATGTTCAGAGAAATAGAAGAAACCTCCAGAGTGTGTTCAGCTAATGATGTCCCTGTGCCTTTTCACATGGAAAATAGCAATGAAGATGAAGAGGCAACCATCCTGTATAGAAGTGGGAAGGAAGATGATCATTGTATTCTCAGCGGAGTTTCGCCGTCAAAGTCATCAGCACATGATGAGAAAAAAGTAGCCCAGTCATTTACTTCCCCTTTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATACCATATCAATTTTCGATGGCACATCTTCCAAGCTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTAAATTCTGTGCCAACAACTAGAGTGCATACAAGTCATACTCTCTGCGGAGGATGGATGGCTTTTGTACGTGGCAATAACATAAAGGTTGGAGACATCTGCATTTTTGAACTTGTGCATGAATGTGAATTACTTGTTCGCATTGCTGGGGCTGGAAAAGATGAGCTAGACTGCCAGGTTGGAAAACTTGCTTTTAGTAGACCTAGCTCAGGACATGCTGTCGCTTGCCATAAGACTTCCCGATATATGCCGATGAGTCCCAAAGTCAGCTCAAAATGCATAAGAAAAGTTGATCTATCAGAGAAAAAGTGGTCAAAGATTGGTCAAGAAGCTGTTTTATCCATTGACTTGAAATCTGGTAGAGCTTCAAATACTTCTAAAAAGATGGGGCTTTGCCCGCAGTCGAAAGCTGCCCATAAAAAGTTGGCTGTTCAGAAGAGACATCGTGTTGAGGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGGGTAGCTCAAGCTTTTACTTCCCCTTTCCCTAGTTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTCTGAAAATCCCATACCAGTTCTCCGCTGCACATCTCCCAACTTACAAAACAGAAGTTATGCTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAATTCTGTCCCAGATGCAAAAGGCAGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTACGTGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTCGTTGCTCAGTGTGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCAAAATGGGCATGTAAAACTCAATAAATTAGCTACCGTTCCATCTACCTGCTAA 1809 0.4063 MACDCEGKLNVRRPHFYEVYSSTSTSEKLKIPDGFICHMEGRTCGLVSLTGPSGNTWRVQLIKQNNDLFFCHGWPTFVVDHCLECGDLLVFRYKGHLHFTVQVFDKNACEKEAAFHSECSQNSCNFDNVKGQKRDSKENSSLDVVESVSKKMRSSAIENHELGLGIVRKELSQYEIVKPISMFREIEETSRVCSANDVPVPFHMENSNEDEEATILYRSGKEDDHCILSGVSPSKSSAHDEKKVAQSFTSPFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPSCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELLVRIAGAGKDELDCQVGKLAFSRPSSGHAVACHKTSRYMPMSPKVSSKCIRKVDLSEKKWSKIGQEAVLSIDLKSGRASNTSKKMGLCPQSKAAHKKLAVQKRHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVMLRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGHVKLNKLATVPSTC 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2549g00003 602 CDD B3_DNA 21 105 IPR003340 GO:0003677
Gabi2549g00003 602 Pfam B3 DNA binding domain 255 347 IPR003340 GO:0003677
Gabi2549g00003 602 Pfam B3 DNA binding domain 483 570 IPR003340 GO:0003677
Gabi2549g00003 602 Pfam B3 DNA binding domain 21 107 IPR003340 GO:0003677
Gabi2549g00003 602 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Gabi2549g00003 602 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 23 353 IPR044837 -
Gabi2549g00003 602 SUPERFAMILY DNA-binding pseudobarrel domain 476 577 IPR015300 -
Gabi2549g00003 602 SUPERFAMILY DNA-binding pseudobarrel domain 248 349 IPR015300 -
Gabi2549g00003 602 CDD B3_DNA 253 347 IPR003340 GO:0003677
Gabi2549g00003 602 ProSiteProfiles B3 DNA-binding domain profile. 483 579 IPR003340 GO:0003677
Gabi2549g00003 602 Gene3D - 8 109 IPR015300 -
Gabi2549g00003 602 SUPERFAMILY DNA-binding pseudobarrel domain 19 112 IPR015300 -
Gabi2549g00003 602 ProSiteProfiles B3 DNA-binding domain profile. 255 351 IPR003340 GO:0003677
Gabi2549g00003 602 Gene3D - 468 578 IPR015300 -
Gabi2549g00003 602 Gene3D - 234 350 IPR015300 -
Gabi2549g00003 602 SMART B3_2 16 107 IPR003340 GO:0003677
Gabi2549g00003 602 SMART B3_2 255 351 IPR003340 GO:0003677
Gabi2549g00003 602 SMART B3_2 483 579 IPR003340 GO:0003677
Gabi2549g00003 602 CDD B3_DNA 481 575 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2549g00003 Gabi-Chr2549 38615 44056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2549g00003 13 361 B3 DNA Binding Superfamily AT3G18990 24.194 8.29e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2549g00003 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2549g00003 - - gmx:100814386 1025.39