Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00017 ATGAAGAATCTGCACTGGTTTAAACAAATTTCCAACAACGGCAAGTCAGGGAGAAGGGTTTCGCTTGGGGAGTACAAGCGAGCAGTGTCATGGTCCAAGTATCTTGTTTCATCTGGGGCTGCTATAAAGGGAGAAGGAGAAGATGAATGGAGTGCAGATATGTCTCAGTTGTTCATTGGATCCAAGTTTGCTTCTGGAAGACACAGCAGAATCTACAGAGGTGTCTACAAGCAAAAGGATGTGGCAATTAAGCTTGTAAGTCAACCGGAGGAGGATGAGGACTTGGCTGCTTTTCTTGAGAAGCAATTTACTTCCGAGGTTGCTTTGCTCCTTCGTTTGCGCCATCCGAATATCATTACTTTTATTGCTGCTTGCAAGAAACCTCCCGTCTTTTGTATAATTACTGAGTATTTGGCTGGAGGCTCATTGAGAAAATACCTGCATCATCAAGAACCACATTCGGTTCCACTCGAACTTGTTCTGAAATTAGCCCTGGACATTGCACGGGGGATGCAATATCTTCATTCTCAGGGGATACTTCATAGGGATCTCAAATCAGAGAATCTCCTGTTGGGGGAAGATATGTGTGTAAAAGTAGCAGATTTTGGTATCTCATGCTTAGAATCTCAGTGTGGTAGTGCAAAAGGATTTACCGGAACTTATCGTTGGATGGCACCTGAAATGATCAAAGAAAAGCATCATACCAAGAAAGTAGATGTCTATAGTTTTGGCATAGTTTTATGGGAGCTTCTAACAGGACTGACACCATTTGACAATATGACACCAGAGCAGGCAGCATTTGCTGTTACCCACAAGAATGCAAGACCACCATTGCCATCTGAATGTCCTTGGGCATTTAGTAATCTCATCAACAGATGCTGGTCAAGCAATCCTGATAAAAGGCCACATTTTGATGAAATTGTCTCCACTTTGGAGAACTATACTGAATCACTTGAGCAGGATCCAGACTTTTTCTCAACATACAAACCTCCTCCTACTAATACAATTATGGGATGCTTTCCAAAATGCAACGCTCGCCATAAATCTGCTACTTGCAAAGCTTAG 1065 0.4254 MKNLHWFKQISNNGKSGRRVSLGEYKRAVSWSKYLVSSGAAIKGEGEDEWSADMSQLFIGSKFASGRHSRIYRGVYKQKDVAIKLVSQPEEDEDLAAFLEKQFTSEVALLLRLRHPNIITFIAACKKPPVFCIITEYLAGGSLRKYLHHQEPHSVPLELVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGLTPFDNMTPEQAAFAVTHKNARPPLPSECPWAFSNLINRCWSSNPDKRPHFDEIVSTLENYTESLEQDPDFFSTYKPPPTNTIMGCFPKCNARHKSATCKA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00017 354 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 314 - -
Gabi2546g00017 354 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Gabi2546g00017 354 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Gabi2546g00017 354 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Gabi2546g00017 354 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Gabi2546g00017 354 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Gabi2546g00017 354 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Gabi2546g00017 354 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00017 354 Gene3D Phosphorylase Kinase; domain 1 47 138 - -
Gabi2546g00017 354 Pfam Protein tyrosine and serine/threonine kinase 60 311 IPR001245 GO:0004672|GO:0006468
Gabi2546g00017 354 CDD STKc_MAP3K-like 64 311 - -
Gabi2546g00017 354 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00017 354 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Gabi2546g00017 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gabi2546g00017 354 Gene3D Transferase(Phosphotransferase) domain 1 140 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00017 Gabi-Chr2546 190280 193385 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00017 30 320 MAP Kinase Kinase Kinase AT1G62400 66.102 3.50e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi2546g00017 PK_Tyr_Ser-Thr 2.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00017 - - gmx:100807757 658.292