Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00013 ATGAAGGAAAACAGTGATGGGTTTGTGAGGGCTGATCAGATTGATCTGAAGAGCATAGATGAACAGTTAGAGAGGCACCTAAACAAGGCATTGACTATTGAGAAGAAGAAGCAGAGAGAGGAAGATGGTGTTGATCATGTTCGTAACACAAGCTCTATTGCCACTGCCATTAAATTCAAAAGTGTAGCAGCAACAGGTGGTGGTGTTGGTGGTGTTACCTTGAAGAAGCAAAGGCTGGAGTGGGAAATTGACCCTTCTAACCTCATCATCAAGAGTGTCATAGCTCGTGGCACTTTCGGTACTGTTCACCGTGGTGTCTATGATGGCCAAGATGTCGCTGTTAAAATGCTGGACTGGGGTGAAGAAGGGCAACGGACAGAAGCTGAAATTGCTTCCCTTAGGTCGGCATTTACACAAGAAGTTGCTGTTTGGCATAAACTTGATCATCCTAATGTCACTAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTACAGATACAAACCGATAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTGCCCTCAAATCTTTCCTAATAAAGAATAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCGCGAGGGCTGAGTTATCTTCACTCTCAGAAAATTGTCCACAGAGATGTAAAGACCGAGAACATGCTGTTGGATAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTTGAAGCGTCAAATCCTAATGACATGACTGGGGAGACTGGTACACTTGGTTACATGGCTCCTGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATATGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACTTCAGCTGTTGTTCGCCAGAATCTGAGACCAGAAATTCCAAGATGTTGCCCAAGTTCTCTGGCAAATGTAATGAAGAGATGCTGGGATGCCAATCATGATAAACGGCCTGAAATGGATGAGGTAGTTTCCATGCTGGAGGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTGTTGATCAGCAACAGGGTTGTCTTTGCTTCCGTAAGTACAGAGGGCCTTGA 1176 0.4388 MKENSDGFVRADQIDLKSIDEQLERHLNKALTIEKKKQREEDGVDHVRNTSSIATAIKFKSVAATGGGVGGVTLKKQRLEWEIDPSNLIIKSVIARGTFGTVHRGVYDGQDVAVKMLDWGEEGQRTEAEIASLRSAFTQEVAVWHKLDHPNVTKFIGATMGSSELQIQTDNGLISMPSNICCVVVEYLAGGALKSFLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKRCWDANHDKRPEMDEVVSMLEAIDTSKGGGMIPVDQQQGCLCFRKYRGP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00013 391 Coils Coil 16 36 - -
Gabi2546g00013 391 PRINTS Tyrosine kinase catalytic domain signature 185 198 IPR001245 GO:0004672|GO:0006468
Gabi2546g00013 391 PRINTS Tyrosine kinase catalytic domain signature 223 241 IPR001245 GO:0004672|GO:0006468
Gabi2546g00013 391 PRINTS Tyrosine kinase catalytic domain signature 289 311 IPR001245 GO:0004672|GO:0006468
Gabi2546g00013 391 PRINTS Tyrosine kinase catalytic domain signature 333 355 IPR001245 GO:0004672|GO:0006468
Gabi2546g00013 391 FunFam Serine/threonine-protein kinase HT1 188 373 - -
Gabi2546g00013 391 ProSiteProfiles Protein kinase domain profile. 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00013 391 SMART serkin_6 88 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00013 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Gabi2546g00013 391 SUPERFAMILY Protein kinase-like (PK-like) 76 362 IPR011009 -
Gabi2546g00013 391 Gene3D Transferase(Phosphotransferase) domain 1 189 380 - -
Gabi2546g00013 391 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 65 365 - -
Gabi2546g00013 391 CDD STKc_MAP3K-like 94 362 - -
Gabi2546g00013 391 Pfam Protein tyrosine and serine/threonine kinase 90 362 IPR001245 GO:0004672|GO:0006468
Gabi2546g00013 391 Gene3D Phosphorylase Kinase; domain 1 77 171 - -
Gabi2546g00013 391 FunFam Kinase suppressor of Ras 1 77 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00013 Gabi-Chr2546 121376 126126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00013 1 323 MAP Kinase Kinase Kinase AT5G50000 80.186 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi2546g00013 PK_Tyr_Ser-Thr 2.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00013 - - gmx:100809898 710.679