Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00012 ATGAAGGAAAACAGTGATGGGTTTGTGAGGGCTGATCAGATTGATCTGAAGAGCATAGATGAACAGTTAGAGAGGCACCTAAACAAGGCATTGACTATTGAGAAGAAGAAGCAGAGAGAGGAAGATGGTAAGCAAAGGCTGGAGTGGGAAATTGACCCTTCTAACCTCATCATCAAGAGTGTCATAGCTCGTGGCACTTTCGGTACTGTTCACCGTGGTGTCTATGATGGCCAAGATGTCGCTGTTAAAATGCTGGACTGGGGTGAAGAAGGGCAACGGACAGAAGCTGAAATTGCTTCCCTTAGGTCGGCATTTACACAAGAAGTTGCTGTTTGGCATAAACTTGATCATCCTAATGTCACTAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTACAGATACAAACCGATAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTGCCCTCAAATCTTTCCTAATAAAGAATAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCGCGAGGGCTGAGTTATCTTCACTCTCAGAAAATTGTCCACAGAGATGTAAAGACCGAGAACATGCTGTTGGATAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTTGAAGCGTCAAATCCTAATGACATGACTGGGGAGACTGGTACACTTGGTTACATGGCTCCTGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATATGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACTTCAGCTGTTGTTCGCCAGAATCTGAGACCAGAAATTCCAAGATGTTGCCCAAGTTCTCTGGCAAATGTAATGAAGAGATGCTGGGATGCCAATCATGATAAACGGCCTGAAATGGATGAGGTAGTTTCCATGCTGGAGGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTGTTGATCAGCAACAGGGTTGTCTTTGCTTCCGTAAGTACAGAGGGCCTTGA 1080 0.4389 MKENSDGFVRADQIDLKSIDEQLERHLNKALTIEKKKQREEDGKQRLEWEIDPSNLIIKSVIARGTFGTVHRGVYDGQDVAVKMLDWGEEGQRTEAEIASLRSAFTQEVAVWHKLDHPNVTKFIGATMGSSELQIQTDNGLISMPSNICCVVVEYLAGGALKSFLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKRCWDANHDKRPEMDEVVSMLEAIDTSKGGGMIPVDQQQGCLCFRKYRGP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00012 359 SUPERFAMILY Protein kinase-like (PK-like) 45 330 IPR011009 -
Gabi2546g00012 359 Coils Coil 16 36 - -
Gabi2546g00012 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Gabi2546g00012 359 Gene3D Transferase(Phosphotransferase) domain 1 157 348 - -
Gabi2546g00012 359 Pfam Protein tyrosine and serine/threonine kinase 58 330 IPR001245 GO:0004672|GO:0006468
Gabi2546g00012 359 SMART serkin_6 56 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00012 359 PIRSF ILK 4 339 - -
Gabi2546g00012 359 Gene3D Phosphorylase Kinase; domain 1 45 139 - -
Gabi2546g00012 359 FunFam Kinase suppressor of Ras 1 45 140 - -
Gabi2546g00012 359 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Gabi2546g00012 359 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Gabi2546g00012 359 PRINTS Tyrosine kinase catalytic domain signature 153 166 IPR001245 GO:0004672|GO:0006468
Gabi2546g00012 359 PRINTS Tyrosine kinase catalytic domain signature 191 209 IPR001245 GO:0004672|GO:0006468
Gabi2546g00012 359 FunFam Serine/threonine-protein kinase HT1 156 341 - -
Gabi2546g00012 359 ProSiteProfiles Protein kinase domain profile. 56 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00012 359 CDD STKc_MAP3K-like 62 330 - -
Gabi2546g00012 359 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 47 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00012 Gabi-Chr2546 121376 126126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00012 1 291 MAP Kinase Kinase Kinase AT5G50000 79.495 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi2546g00012 PK_Tyr_Ser-Thr 1.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00012 - - csv:101209182 673.7