Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00010 ATGGTATTGGAGATTGTGATTTCTTTGATCATCTTGTTTATGGGGATTGCTGTTTTGGTGTGCATCCATGTCTGCATAGTTGGAAGGGCATTCAGAAGTGATATTAATCATGGTCATGGTGGATGGACTCAAGGCCAGAGGAGTAGCAGTAACACCAAAAGAATAACTGGTGATAATAGTAGTGACCTGAAGAACCTTCCTTGCTTTGATTATGAGGAACCAGAGAAAGGTTCCAGTCTTATAGATTGTGCTGTTTGCTTGGAGAATTTCAAGGTTGGTGATGCTTGCAGGTTGTTGCCTAACTGCAGCCACAGCTTCCATGTTCAGTGTATAGACCCATGGATACTAAAGACACCCATTTGTCCCATTTGTCGAACATGGGTTCATATCATTCCCCCAGTTTTGACAGAAGAAAGTGCTGTTTCTCACAATGTAGAAATTGAAATGGCATAA 453 0.415 MVLEIVISLIILFMGIAVLVCIHVCIVGRAFRSDINHGHGGWTQGQRSSSNTKRITGDNSSDLKNLPCFDYEEPEKGSSLIDCAVCLENFKVGDACRLLPNCSHSFHVQCIDPWILKTPICPICRTWVHIIPPVLTEESAVSHNVEIEMA 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00010 150 FunFam RING-H2 finger protein ATL2K 58 131 - -
Gabi2546g00010 150 SUPERFAMILY RING/U-box 67 133 - -
Gabi2546g00010 150 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Gabi2546g00010 150 SMART ring_2 83 124 IPR001841 -
Gabi2546g00010 150 CDD RING-H2_PA-TM-RING 82 125 - -
Gabi2546g00010 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 129 - -
Gabi2546g00010 150 Pfam Ring finger domain 82 125 IPR001841 -
Gabi2546g00010 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 130 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00010 Gabi-Chr2546 118106 118558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00010 57 130 C3H Transcription Factor Family AT2G18670 44.000 1.53e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00010 - - vvo:131658249 196.823