Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00007 ATGTCTCTTAAACCCTATCCACCATCAACAGATCGTCGTGCCCTATCATTTCCAGCAGTGCACCCTTGCGAAGCCATATCTCAAGCAACCCTCCTCGCCTCTTTAATCACTCTCTCACAAAACATATGCAATTTTCAATCAAATTCCTTCATCACACAACGAAGAAACGCCAAAGAAACAGCGCGCCAGATCACCATCCTTCTCTTATTCTTCCAAGAAATCCAAGGCAGTGGTTCAGTTATCCCAAACGACGTCGTTCTCTGCTTCTCAGAGCTCCACCTCACCTTCCAAAAAATCCACTTCTTAATGCAAGACTGTGCTCGCGAAGGTTCACGCCTTTGGATGCTGATGAAATCCCAATACGTCGCGGCACAGTTTCGGGTCCTCATTCGAGCCATGGCCACAGCTCTCGACGTGTTGCCCCTCCATACCGTTGAGGCATGCGGTGAGGTAAAAGAGTTAGTTGAGTTAGTTACCAAGCAAGCTAGGAAAGGCAAGTTCGAACTCGACCCAGACGATGAACGCCAAGTCAAACATGTTCATTCAGTTTTGGATAAGTTCGAAAGGGGAATCGAGCCTCACGTGGATACCATTAAGGGAATAATACTTGACTACCTTAAAATTACAAATTGGAGTGATTGTAACAAAGAAATCAAATTCCTAGAAGACCAAATAAGAGGTGCAGGTGCAGAGGTTTTAAGCTGCGGAGTACCAGAAGATTTCCGTTGCCCAATTTCGCTCGAGCTAATGACGGATCCAGTGACTGTATCCACTGGACAAACATACAACCGAGCCTCAATTCAAAAATGGTTGAAAGCAGGAAACATGATATGCCCCAAAACATTGGAGAAGCTAACGACAACAGAGTTGTTACCAAACACAATGCTTAAAAAGCTTATCCAACAGTTCTGTTCAGATAACAACATCTCAATAACCAAGTCGAGTGATTGCAACCGTAACATAGCCAGGACCATCGAACCAGGTAGTCCCGCTTCAGCACATGCCATGCAGTTCCTGTCGTGGTTTCTTTCTCGTAGGCTAGTTTTTGGAACCGAGGAACAGAAAAAAAAAGCTGCTTTTGAGATTCGTTTGCTTGCAAGGTCCAACATTTTCAACAGGGCGTGCTTGGTTGAAATGGGCACGGTGCCACCACTGCTAGATCTTCTAGCTACGGATGATAGAACCACGCAAGAAAACGCAATCGCTGCTCTGATGAAGCTATCAAAGCATAACAGTGGCCAGAAAATTATTATGGATAGTAGGGGTTTGGCACCGATCCTTAAAGTTCTCAAAAGGGGGCATAGTCTAGAAGCTCGCCAAGTCGCAGGTGCTACAATATTTTATCTTTCTTCGGTGAAAGAGTACAGAAAAATTATAGGGGAAAACCCAGAGGCAATTCCTGCTTTAGTTGAAATGATCAAGGAAGGAACAACTTGTGGGAAAAAGAATGCAGTGGTTGCAATTTTTGGGCTGCTTTTATTTCCTAGGAATCACCCAAAGGTGCTTGAAGCTGGTGCTGTTCCTGCGCTTGTTGGTGTCTTAGCTTCTTCTGATAAAGCTGATCTTATCACCGATTGTTTAGCAGTTCTTGTAGCCTTGGCAGGGAGTGTTGAGGGAGCTAATGGTGTATTACAAGCCTCTGCTTTGCCATTGGTAACTGGGATTTTGCAATCTGCAACATCGCGTGCAGGGAAGGAACACTGTGTTTCAATTTTGCTATCCCTGTGTGTCAATGTTGGTGCTGATGTACTGGGTGTTTTAGCAAAGGACCCATCACTTATGCCTTTGCTTTATTCACTTCTTACGAATGGTACACCTCATGCTGCAAAGAAAGCACGCTCCCTCATCAAAGTTCTACAAGAATTCAACGAGAAAAAAACTTATGGATCGGTGGAGTCGTCTGTTTCGCCGCAAAGATTAGTTCACTTATCTTGA 1935 0.4455 MSLKPYPPSTDRRALSFPAVHPCEAISQATLLASLITLSQNICNFQSNSFITQRRNAKETARQITILLLFFQEIQGSGSVIPNDVVLCFSELHLTFQKIHFLMQDCAREGSRLWMLMKSQYVAAQFRVLIRAMATALDVLPLHTVEACGEVKELVELVTKQARKGKFELDPDDERQVKHVHSVLDKFERGIEPHVDTIKGIILDYLKITNWSDCNKEIKFLEDQIRGAGAEVLSCGVPEDFRCPISLELMTDPVTVSTGQTYNRASIQKWLKAGNMICPKTLEKLTTTELLPNTMLKKLIQQFCSDNNISITKSSDCNRNIARTIEPGSPASAHAMQFLSWFLSRRLVFGTEEQKKKAAFEIRLLARSNIFNRACLVEMGTVPPLLDLLATDDRTTQENAIAALMKLSKHNSGQKIIMDSRGLAPILKVLKRGHSLEARQVAGATIFYLSSVKEYRKIIGENPEAIPALVEMIKEGTTCGKKNAVVAIFGLLLFPRNHPKVLEAGAVPALVGVLASSDKADLITDCLAVLVALAGSVEGANGVLQASALPLVTGILQSATSRAGKEHCVSILLSLCVNVGADVLGVLAKDPSLMPLLYSLLTNGTPHAAKKARSLIKVLQEFNEKKTYGSVESSVSPQRLVHLS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00007 644 FunFam RING-type E3 ubiquitin transferase 237 309 - -
Gabi2546g00007 644 FunFam RING-type E3 ubiquitin transferase 317 630 - -
Gabi2546g00007 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 312 IPR013083 -
Gabi2546g00007 644 SMART arm_5 494 535 IPR000225 GO:0005515
Gabi2546g00007 644 SMART arm_5 368 409 IPR000225 GO:0005515
Gabi2546g00007 644 SMART arm_5 410 451 IPR000225 GO:0005515
Gabi2546g00007 644 Gene3D - 349 462 IPR011989 -
Gabi2546g00007 644 PANTHER U BOX DOMAIN-CONTAINING 80 619 - -
Gabi2546g00007 644 Pfam Armadillo/beta-catenin-like repeat 372 404 IPR000225 GO:0005515
Gabi2546g00007 644 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Gabi2546g00007 644 SUPERFAMILY RING/U-box 230 310 - -
Gabi2546g00007 644 Gene3D - 463 626 IPR011989 -
Gabi2546g00007 644 Pfam U-box domain 237 308 IPR003613 GO:0004842|GO:0016567
Gabi2546g00007 644 CDD RING-Ubox_PUB 238 290 IPR045210 -
Gabi2546g00007 644 SUPERFAMILY ARM repeat 349 619 IPR016024 -
Gabi2546g00007 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 505 548 IPR000225 GO:0005515
Gabi2546g00007 644 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Gabi2546g00007 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 380 422 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00007 Gabi-Chr2546 96522 98910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00007 7 642 U-box Gene Family AT1G60190 39.826 2.10e-159 472