Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00006 ATGAACAGCGATCTCCATCGATTCGGAGTGTCATCTCATTTCAGGGGGCGTTTCCCGAAATCGTTCTCTCTAAGAAAGAAAGTGCCATGGTGGTACCAAATCCTTGATCCACGTTCAAAGTTCATTGCACAATGGAACCGTTACTTCCTATATGCATGCATTGGCGCTCTGTTCCTCGACCCTCTCTACTTCTACTTCCCTGTCTCCGGAGACAAAGCATGCATGGAGACAGACTTGGTCCTCGGCGTCTTCGTCACATTCTCACGCACAGTCGCCGACCTCTTCTTCCTCTTCCACATGGTCCTCAAGTTTCGCACCGCCTTCGTTTCTCCCACTTCCCGCGTTTATGGCCGCAAAGAACTCGTCACCGATCCCGGCCAGATCGCCTCTCGCTACCTCAAGTCTGATTTCATCGTTGATCTCTTCGCCACCCTTCCTCTTCCCCAGATTGTGATTTGGTTCGTGATTCCGGCGGTGAAAGATTCAACGGCAGCTCATGTGAATCACACGCTGTCCCTGATTGTTCTGATTCAGTATATTCCTCGGTCATTTCAGATTATTCCCCTGCAACGGCGAATCTTGAAGACAAGCGGGCTCATAACAAAAACTGCATTGGCAGGGGCATTGTACAATCTTGGTTTCTACATGCTGGCCAGCCATGTTCTAGGAGCTTCGTGGTATGTGACATCCATTCAGCGCCAGTTCGAGTGTTGGAGAATAACTTGCAAGAAAGAGATGAATAGAACGCACTCTCCATCTTGTAATCCTTCGTTTCTCGATTGTGCTACCCTCGGCAACCACGAACGCCAAGCATGGTTCAGACGCACTAGAGTCCTCACTGATTGTGATGCTCTCAATGATAAAAACTTTCAGTTTGGAATGTTCGCTGATGCTTTTACTGATCATGTCTCTTCATCAAGATTCTTCCAGAAATACTTTTACTGCCTCTGGTGGGGTTTAAAAAATCTAAGTTCATATGGACAAAATATTCAGACCAGCACTTACAGTGGTGAAACATTATTTTCAAGTTGCATCTGCATAGCAGGTCTAATCCTCTTTGCGCATCTCATTGGTAACATGCAGAACTATCTACAATCTACAACTGCAAGACTTGAAGAGTGGAGACTTAGACAAAAAGATACAGAAGAATGGATGAATCATCGCCAACTTCCACCAGAACTGCAAGAACGTGTTCGTCGGTTTGTTCAATATAAATGGCTTGCCACTAGAGGTGTAGATGAAGAAGCCATTTTGCGATCTTTGCCTTTGGACCTTAGGCGCCAGATACAGAGGCATCTCTGTCTTGAAATTGTTCGCCGGGTTCCTTTTTTTGGTCAAATGGATGATCAGCTCCTAGATGCTATATGTGAACGCCTTGTTTCATCCTTGAACACAAAAGACACTCACGTGGTTAGGGAAGGTGATCCAGTTAGAGAAATGCTTTTTATCATTAGAGGACAAGTAGAGAGCTCCACAACTGATGGTGGAAGATCAGGGTTTTTCAACACTATCACTCTCAGACCCGGTGACTTTTGTGGTGAAGAATTGCTAACATGGGCCTTGATGGCAACTTCTAGTCTTAACCTTCCATCTTCCACTCGAACAGTTAAGACCCTCACTGAAGTTGAAGCATTTGCACTTAGAGCTGAGGACCTCAAATTTGTAGCCAGCCAGTTTAAGCGCCTCCACAGCAAGAAACTCCAACATGCTTTCAGGTACTATTCCCATCAGTGGAGAGCTTGGGGGGCTTGCTTTATACAAGCTGCTTGGAGACGTCACAGCAAGAGAAAATTGGCAATGGAGTTGTTAGAAAAAGAGAACTTGTACTACACAAATGTGATGGAGCTAGAAGATGATGAAGAAACTAGTGCAGGAGAAAGTTCAATGGGGGATATTGCTAGCCTTACTCAGAATCTTGGGGCTACAGTTTTGGCTTCAAAATTTGCTGCAAACACTAAAAAAGGGGCAATTAAAAAGGTATCAATCCCTGATTCTGACAGTTTAAAGATGCCCAAGATGTTCAAGCCAACAGAGCCTGATTTCTCAAAATTCCAAGATTAG 2061 0.4498 MNSDLHRFGVSSHFRGRFPKSFSLRKKVPWWYQILDPRSKFIAQWNRYFLYACIGALFLDPLYFYFPVSGDKACMETDLVLGVFVTFSRTVADLFFLFHMVLKFRTAFVSPTSRVYGRKELVTDPGQIASRYLKSDFIVDLFATLPLPQIVIWFVIPAVKDSTAAHVNHTLSLIVLIQYIPRSFQIIPLQRRILKTSGLITKTALAGALYNLGFYMLASHVLGASWYVTSIQRQFECWRITCKKEMNRTHSPSCNPSFLDCATLGNHERQAWFRRTRVLTDCDALNDKNFQFGMFADAFTDHVSSSRFFQKYFYCLWWGLKNLSSYGQNIQTSTYSGETLFSSCICIAGLILFAHLIGNMQNYLQSTTARLEEWRLRQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILRSLPLDLRRQIQRHLCLEIVRRVPFFGQMDDQLLDAICERLVSSLNTKDTHVVREGDPVREMLFIIRGQVESSTTDGGRSGFFNTITLRPGDFCGEELLTWALMATSSLNLPSSTRTVKTLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRAWGACFIQAAWRRHSKRKLAMELLEKENLYYTNVMELEDDEETSAGESSMGDIASLTQNLGATVLASKFAANTKKGAIKKVSIPDSDSLKMPKMFKPTEPDFSKFQD 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00006 686 Pfam Ion transport protein 45 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi2546g00006 686 FunFam Cyclic nucleotide-gated ion channel 1 441 559 - -
Gabi2546g00006 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 681 - -
Gabi2546g00006 686 SMART cnmp_10 443 574 IPR000595 -
Gabi2546g00006 686 CDD CAP_ED 443 574 IPR000595 -
Gabi2546g00006 686 Gene3D - 73 367 - -
Gabi2546g00006 686 Gene3D Helix hairpin bin 369 434 - -
Gabi2546g00006 686 SUPERFAMILY cAMP-binding domain-like 372 568 IPR018490 -
Gabi2546g00006 686 ProSiteProfiles cAMP/cGMP binding motif profile. 443 573 IPR000595 -
Gabi2546g00006 686 FunFam Cyclic nucleotide-gated ion channel 1 370 434 - -
Gabi2546g00006 686 SUPERFAMILY Voltage-gated potassium channels 36 365 - -
Gabi2546g00006 686 Gene3D Jelly Rolls 441 561 IPR014710 -
Gabi2546g00006 686 MobiDBLite consensus disorder prediction 666 686 - -
Gabi2546g00006 686 PRINTS EAG/ELK/ERG potassium channel family signature 356 365 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2546g00006 686 PRINTS EAG/ELK/ERG potassium channel family signature 100 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2546g00006 686 PRINTS EAG/ELK/ERG potassium channel family signature 406 413 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2546g00006 686 PRINTS EAG/ELK/ERG potassium channel family signature 312 329 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2546g00006 686 PRINTS EAG/ELK/ERG potassium channel family signature 338 349 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2546g00006 686 Pfam Cyclic nucleotide-binding domain 466 554 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00006 Gabi-Chr2546 79824 84055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00006 3 681 Ion Channels AT3G48010 65.957 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00006 K05391 - gmx:100783672 1240.71