Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00005 ATGGTGACAAGATCGTGCATGAATTTGTTGGACTTGGTGTCAGGGGATATTCTAAATCACCCTCAAACTCCCAGAGCTCTACCGCGAGTTATGACTCTTCCGGGAGTTATATCTGATGTAGATAGTAGACAAAGTAATGATGATGGTTCAAATGTTTTCTCATCAGAACACCATCGCAAGATAATTATAGTAGCAAATTTTCTTCCTCTCAATTGTAAAAGGGATAGCATATCTGGCAGATGGTGCTTTAGCTATGATGAAGATTCAATTTTTTTGCAGTTAAAGGATGGTCTCTCTTCTGATACTGATGTTGTTTACGTGGGATCTCTGAATGTTGATGTTGATGCAAGCGAGCAAGAGAAAGTTTCCCTTCAGTTACTGGAGGAATTCAATTGCTTGCCAACTTTTATTCCTACAGACCTCCAAAAACAGTTTTATAATGGATTCTGCAAGCAATATTTGTGGCCACTATTCCATTACATGTTGCCCATGTATCCAGGCTATTGCAATCGCTTTGATAGGTCCTTGTGGCAAGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGATCATTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTAATGGTTCTTCCAACATTTCTGCGGAAGCGGTATAGTCGGGTCAAGCTAGGATTTTTCCTCCATAGGCCATTTCCTTCATCAGAAATTTATCGAACTCTGCCAGTCAGAGGTGAGATTTTGAAAGCATTGCTTAATGCAGATTTAATTGGTTTTCACACATTTGATTATGCACGCCATTTTTTGTCCTGCTGTAGTAGAATGCTTGGCTTGGAATATAAATCCAAAAGGGGTTACATTGGGCTTGAATACTTTGGTCGTACAATATTCATTAAAATATTACCTGTTGGGATTCATATGGGTAGACTTCAATCTGCCTTAAATCACTCTTCCTCTTCTATCAAAGTTAGAGAAATCCGCAAACAATTTAAAGGGAAAAAACTTATTATTGGTGTTGATGATATGGATATATTTAAAGGTATCAGTTTAAAGCTCTTGGCTTTTCAACAACTCCTGCAGCAATATCCAGAACTACAGGGTGAATTAATACTAGTCCAAATTTTGAAACCCCCAGGGAGTACCGGTAAAGATTTTGAGGAAGCTAAGGAGGAGGCATACACTACTGCCAAAAAGATAAATGAAAGATTTGGTTTTCCAGGTTATGAACCTGTCATCATCATTGATTATGATGTTCCTTTCTATGAGAAGATAGCTTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGGGATGGTATGAATTTGGTTCCATACAAATACATTGTCTGTAGGCAAGGGAGTTATCAAATGGACGAGGCCTTAGATATTGCTCCTGACTCCCCTCATACAAGTGCGCTTGTTGTTTCAGAATTTATAGGGTGCTCGCCATCTCTTAGTGGGGCAATCAAGGTAAACCCTTGGGATATCAATGCCGTAGCTGAAGCACTACATTTGGCTATCACAATGCCTATTGGAGAGAAAATTTTGCGGCATGAGAAGCACTATCGTTATGTTAGTTCTCACGATGTGGCTTATTGGGCGCGAAGCTTTGAGCAAGATCTAGTGTTGTCGTGCAAAGATCACTATAGTAAACGTTGTTGGGGCATTGGCTTTGGCCTGAATTTCAGAATTTTGTCCCTCTCTCCTAGCTTCAGGAAGCTGTCTATAGACCACATTGTCTCTGCATATAAAAGGACAACTTGCAGGGCAATCTTTCTGGATTATGATGGTACAGTTGTACCTGAAGCTTCCATTGTTAAAGCCCCTAGTCCTGAAGTCATATCTGTGCTAAATAATCTTTGCACTGATCTTAACAACACTGTGTTTATTGTTAGCGGCAGGGGGAAAACCTCATTGAGTGAATGGTTTGATCAGTGTGAAAATCTTGGTATAGCAGCTGAGCATGGTTATTTTAAAAGGTGGGGTAAACAATCAAGTTGGAAAACGAGTCATATAGGTACAGATTTTGCATGGAAGAGGATTGCGGAACCTGTGATGAGATCATATACGGAGGCTACAGACGGCTCCTATATAGAGAGCAAAGAAAGTGCCTTGGTATGGCATTACTATGATGCCGATCCTGATTTTGGATCTTGGCAGGCCATGGAGCTGTTGAATCACCTTGAAAATGTACTTGCAAATGAGCCTGTAGTTGTTAAAAAGGGACAACATATTATTGAAGTCAAGCTTCAGGGGATTACTAAAGGTTTAGTTGCACAGGAAGTTTTGTCTACACTAACCAGGAAAGGAAAACTGCCAGATTTTGTATTGTGCATTGGGGATGATAAATCTGATGAGGATATGTTTGAGAGCATATCAACCAAGCCTTATAATGCAACCTCCTCTTCAGCACCAGAAATATTTGCATGTACTGTTGGGCAAAAACCAAGCAAAGCTAGATACTACTTAGATGATACTGTGGATGTGATGATGTTACTTCATGCTCTTGGTAATGCTTCGGGGCTTAAATCAACATGTTCTTCAGAAGCTCCTTAA 2565 0.3973 MVTRSCMNLLDLVSGDILNHPQTPRALPRVMTLPGVISDVDSRQSNDDGSNVFSSEHHRKIIIVANFLPLNCKRDSISGRWCFSYDEDSIFLQLKDGLSSDTDVVYVGSLNVDVDASEQEKVSLQLLEEFNCLPTFIPTDLQKQFYNGFCKQYLWPLFHYMLPMYPGYCNRFDRSLWQAYVSANKIFADKVMEIINPEDDYVWVHDYHLMVLPTFLRKRYSRVKLGFFLHRPFPSSEIYRTLPVRGEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYKSKRGYIGLEYFGRTIFIKILPVGIHMGRLQSALNHSSSSIKVREIRKQFKGKKLIIGVDDMDIFKGISLKLLAFQQLLQQYPELQGELILVQILKPPGSTGKDFEEAKEEAYTTAKKINERFGFPGYEPVIIIDYDVPFYEKIAYYALAECCIVNAVRDGMNLVPYKYIVCRQGSYQMDEALDIAPDSPHTSALVVSEFIGCSPSLSGAIKVNPWDINAVAEALHLAITMPIGEKILRHEKHYRYVSSHDVAYWARSFEQDLVLSCKDHYSKRCWGIGFGLNFRILSLSPSFRKLSIDHIVSAYKRTTCRAIFLDYDGTVVPEASIVKAPSPEVISVLNNLCTDLNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFKRWGKQSSWKTSHIGTDFAWKRIAEPVMRSYTEATDGSYIESKESALVWHYYDADPDFGSWQAMELLNHLENVLANEPVVVKKGQHIIEVKLQGITKGLVAQEVLSTLTRKGKLPDFVLCIGDDKSDEDMFESISTKPYNATSSSAPEIFACTVGQKPSKARYYLDDTVDVMMLLHALGNASGLKSTCSSEAP 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00005 854 SUPERFAMILY HAD-like 592 840 IPR036412 -
Gabi2546g00005 854 Gene3D Glycogen Phosphorylase B; 314 529 - -
Gabi2546g00005 854 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 840 IPR001830 GO:0003824|GO:0005992
Gabi2546g00005 854 Gene3D - 594 826 IPR023214 -
Gabi2546g00005 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Gabi2546g00005 854 Gene3D - 674 754 - -
Gabi2546g00005 854 FunFam Trehalose-6-phosphate synthase 2 676 754 - -
Gabi2546g00005 854 Pfam Glycosyltransferase family 20 60 544 IPR001830 GO:0003824|GO:0005992
Gabi2546g00005 854 CDD GT20_TPS 60 544 IPR001830 GO:0003824|GO:0005992
Gabi2546g00005 854 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 544 - -
Gabi2546g00005 854 Gene3D Glycogen Phosphorylase B; 52 313 - -
Gabi2546g00005 854 NCBIfam trehalose-phosphatase 592 839 IPR003337 GO:0003824|GO:0005992
Gabi2546g00005 854 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 852 - -
Gabi2546g00005 854 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Gabi2546g00005 854 NCBIfam HAD-IIB family hydrolase 593 794 IPR006379 -
Gabi2546g00005 854 CDD HAD_TPP 593 834 - -
Gabi2546g00005 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Gabi2546g00005 854 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00005 Gabi-Chr2546 50388 54543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00005 1 843 Trehalose Biosynthesis Gene Families AT1G23870 67.853 0.0 1234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00005 K16055 - gmx:100812031 1451.42