Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00004 ATGGTGACAAGATCGTGCATGAATTTGTTGGACTTGGTGTCAGGGGATATTCTAAATCACCCTCAAACTCCCAGAGCTCTACCGCGAGTTATGACTCTTCCGGGAGTTATATCTGATGTAGATAAACACCATCGCAAGATAATTATAGTAGCAAATTTTCTTCCTCTCAATTGTAAAAGGGATAGCATATCTGGCAGATGGTGCTTTAGCTATGATGAAGATTCAATTTTTTTGCAGTTAAAGGATGGTCTCTCTTCTGATACTGATGTTGTTTACGTGGGATCTCTGAATGTTGATGTTGATGCAAGCGAGCAAGAGAAAGTTTCCCTTCAGTTACTGGAGGAATTCAATTGCTTGCCAACTTTTATTCCTACAGACCTCCAAAAACAGTTTTATAATGGATTCTGCAAGCAATATTTGTGGCCACTATTCCATTACATGTTGCCCATGTATCCAGGCTATTGCAATCGCTTTGATAGGTCCTTGTGGCAAGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGATCATTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTAATGGTTCTTCCAACATTTCTGCGGAAGCGGTATAGTCGGGTCAAGCTAGGATTTTTCCTCCATAGGCCATTTCCTTCATCAGAAATTTATCGAACTCTGCCAGTCAGAGGTGAGATTTTGAAAGCATTGCTTAATGCAGATTTAATTGGTTTTCACACATTTGATTATGCACGCCATTTTTTGTCCTGCTGTAGTAGAATGCTTGGCTTGGAATATAAATCCAAAAGGGGTTACATTGGGCTTGAATACTTTGGTCGTACAATATTCATTAAAATATTACCTGTTGGGATTCATATGGGTAGACTTCAATCTGCCTTAAATCACTCTTCCTCTTCTATCAAAGTTAGAGAAATCCGCAAACAATTTAAAGGGAAAAAACTTATTATTGGTGTTGATGATATGGATATATTTAAAGGTATCAGTTTAAAGCTCTTGGCTTTTCAACAACTCCTGCAGCAATATCCAGAACTACAGGGTGAATTAATACTAGTCCAAATTTTGAAACCCCCAGGGAGTACCGGTAAAGATTTTGAGGAAGCTAAGGAGGAGGCATACACTACTGCCAAAAAGATAAATGAAAGATTTGGTTTTCCAGGTTATGAACCTGTCATCATCATTGATTATGATGTTCCTTTCTATGAGAAGATAGCTTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGGGATGGTATGAATTTGGTTCCATACAAATACATTGTCTGTAGGCAAGGGAGTTATCAAATGGACGAGGCCTTAGATATTGCTCCTGACTCCCCTCATACAAGTGCGCTTGTTGTTTCAGAATTTATAGGGTGCTCGCCATCTCTTAGTGGGGCAATCAAGGTAAACCCTTGGGATATCAATGCCGTAGCTGAAGCACTACATTTGGCTATCACAATGCCTATTGGAGAGAAAATTTTGCGGCATGAGAAGCACTATCGTTATGTTAGTTCTCACGATGTGGCTTATTGGGCGCGAAGCTTTGAGCAAGATCTAGTGTTGTCGTGCAAAGATCACTATAGTAAACGTTGTTGGGGCATTGGCTTTGGCCTGAATTTCAGAATTTTGTCCCTCTCTCCTAGCTTCAGGAAGCTGTCTATAGACCACATTGTCTCTGCATATAAAAGGACAACTTGCAGGGCAATCTTTCTGGATTATGATGGTACAGTTGTACCTGAAGCTTCCATTGTTAAAGCCCCTAGTCCTGAAGTCATATCTGTGCTAAATAATCTTTGCACTGATCTTAACAACACTGTGTTTATTGTTAGCGGCAGGGGGAAAACCTCATTGAGTGAATGGTTTGATCAGTGTGAAAATCTTGGTATAGCAGCTGAGCATGGTTATTTTAAAAGGTGGGGTAAACAATCAAGTTGGAAAACGAGTCATATAGGTACAGATTTTGCATGGAAGAGGATTGCGGAACCTGTGATGAGATCATATACGGAGGCTACAGACGGCTCCTATATAGAGAGCAAAGAAAGTGCCTTGGTATGGCATTACTATGATGCCGATCCTGATTTTGGATCTTGGCAGGCCATGGAGCTGTTGAATCACCTTGAAAATGTACTTGCAAATGAGCCTGTAGTTGTTAAAAAGGGACAACATATTATTGAAGTCAAGCTTCAGGGGATTACTAAAGGTTTAGTTGCACAGGAAGTTTTGTCTACACTAACCAGGAAAGGAAAACTGCCAGATTTTGTATTGTGCATTGGGGATGATAAATCTGATGAGGATATGTTTGAGAGCATATCAACCAAGCCTTATAATGCAACCTCCTCTTCAGCACCAGAAATATTTGCATGTACTGTTGGGCAAAAACCAAGCAAAGCTAGATACTACTTAGATGATACTGTGGATGTGATGATGTTACTTCATGCTCTTGGTAATGCTTCGGGGCTTAAATCAACATGTTCTTCAGAAGCTCCTTAA 2523 0.3983 MVTRSCMNLLDLVSGDILNHPQTPRALPRVMTLPGVISDVDKHHRKIIIVANFLPLNCKRDSISGRWCFSYDEDSIFLQLKDGLSSDTDVVYVGSLNVDVDASEQEKVSLQLLEEFNCLPTFIPTDLQKQFYNGFCKQYLWPLFHYMLPMYPGYCNRFDRSLWQAYVSANKIFADKVMEIINPEDDYVWVHDYHLMVLPTFLRKRYSRVKLGFFLHRPFPSSEIYRTLPVRGEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYKSKRGYIGLEYFGRTIFIKILPVGIHMGRLQSALNHSSSSIKVREIRKQFKGKKLIIGVDDMDIFKGISLKLLAFQQLLQQYPELQGELILVQILKPPGSTGKDFEEAKEEAYTTAKKINERFGFPGYEPVIIIDYDVPFYEKIAYYALAECCIVNAVRDGMNLVPYKYIVCRQGSYQMDEALDIAPDSPHTSALVVSEFIGCSPSLSGAIKVNPWDINAVAEALHLAITMPIGEKILRHEKHYRYVSSHDVAYWARSFEQDLVLSCKDHYSKRCWGIGFGLNFRILSLSPSFRKLSIDHIVSAYKRTTCRAIFLDYDGTVVPEASIVKAPSPEVISVLNNLCTDLNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFKRWGKQSSWKTSHIGTDFAWKRIAEPVMRSYTEATDGSYIESKESALVWHYYDADPDFGSWQAMELLNHLENVLANEPVVVKKGQHIIEVKLQGITKGLVAQEVLSTLTRKGKLPDFVLCIGDDKSDEDMFESISTKPYNATSSSAPEIFACTVGQKPSKARYYLDDTVDVMMLLHALGNASGLKSTCSSEAP 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00004 840 Gene3D Glycogen Phosphorylase B; 37 299 - -
Gabi2546g00004 840 Pfam Glycosyltransferase family 20 46 530 IPR001830 GO:0003824|GO:0005992
Gabi2546g00004 840 CDD HAD_TPP 579 820 - -
Gabi2546g00004 840 CDD GT20_TPS 46 530 IPR001830 GO:0003824|GO:0005992
Gabi2546g00004 840 Gene3D - 660 740 - -
Gabi2546g00004 840 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 707 838 - -
Gabi2546g00004 840 SUPERFAMILY HAD-like 578 826 IPR036412 -
Gabi2546g00004 840 FunFam Alpha,alpha-trehalose-phosphate synthase 300 515 - -
Gabi2546g00004 840 FunFam Trehalose-6-phosphate synthase 2 662 740 - -
Gabi2546g00004 840 Gene3D Glycogen Phosphorylase B; 300 515 - -
Gabi2546g00004 840 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 826 IPR001830 GO:0003824|GO:0005992
Gabi2546g00004 840 Gene3D - 580 812 IPR023214 -
Gabi2546g00004 840 NCBIfam trehalose-phosphatase 578 825 IPR003337 GO:0003824|GO:0005992
Gabi2546g00004 840 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 39 298 - -
Gabi2546g00004 840 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 46 530 - -
Gabi2546g00004 840 Pfam Trehalose-phosphatase 581 814 IPR003337 GO:0003824|GO:0005992
Gabi2546g00004 840 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 577 694 - -
Gabi2546g00004 840 NCBIfam HAD-IIB family hydrolase 579 780 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00004 Gabi-Chr2546 50388 54544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00004 1 829 Trehalose Biosynthesis Gene Families AT1G23870 67.616 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00004 K16055 - gmx:100812031 1420.99