Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2546g00002 ATGAAACCAAAATATAGAGCCACTTCAAGGGAAGGGGAATCCAAAACTGCTGCAGCAAAAATGGGTGTGAAACCATTCTCGGTATTCTTCATTGTCATCTTTTTGTTTTTTCTAATGGCCAATTCAGAGAAAGAAGAGGTGAGGCAAGGCCTAGTCACGTTCTTGGATAAACTTGCACCAGGGAATGGACAAAGAGATTCCATGTTGGGTTGGAACCTCATATCAGATCCCTGCACTGATAAGTGGCATGGTGTGAGTTGCCATTCAGACAACAAATCCGTGAAGAGTATAGTTCTTGAGAAGTTTAGCCTAAGTGGTGTTGTTGATGCAAGTTCTCTTTGCATAGTGAAGTCTCTTCAAGTTCTTAGGTTGAGGAACAATGGTTTACATGATTTGATACCGGAGGATATACGAAAATGCAAGTCCTTGACTCACTTGTTTTTGAGTGGGAATAAATTCTCTGGCGATCTTCCTATTTCTATTGCTGAACTAAGTAACTTGAAGCGGCTTCATGTTTCGGACAACTACTTCACGGGACAGCTTCCTAACATGGTTTGTGTTTCAAGTTTGATATCTTTTCTTGCTGAAAACAACAACTTCACTGGGAAAATTCCTGATTTTGACTTCTCCAACCTTGATGCGTTTAATGTCTCCAACAACAATTTACAAGGTCCAGTTCCTGATGTTGGAGGCAAATTCAATGCAGATAGCTTTTCTGGTAATCTTAATTTATGTGGAAAACCACTTTCAAACGCATGTCCACCTTCTTCATCTCCATCTCCATCTCCATCTTCTTCTTCTTCTCAGCCACTTGAGAAGAAAGACAGAAAATCGTTTGGTCATGGCTTTCCCATATATTCAGGTTACATAATTCTTGGTTTAGTTGTCCTGCTTTTCTTGTCCTTCAAATGGGTGAGTAAATTCAAGAACAAAGAAGAAGCATTGGAAGATGAGAAGAAGGAAATGGCACAAGAAACTAGTGGTGACAAGCCTAGTGAAACATCCAATTCCAATGGATCTAAGAATGGTATTGGGATAAGATCCATTAGATCCGAGTATTCGTTGACATCTTTGGAAAGTGGGATGACTACATCAGGCCTTGTTGTTCTTACAAGTCGAACACTCAGGGGATTTCAATTTGAGGACTTGCTCAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCATGGAAGCCTCTACAAGGTTATGCTAGACAATGGGGTGGTGTTGGCAGTCAAGAGGATCAAAGATTGGGGAATTTCAAAGCAAGATTTTAAGAGAAGGATGGACCTGATAGCCCAAGTGAAGCATCCACGCGTAATGCCACCTGTTGCATACTATTGCTCCCAGCAAGAGAAGCTCTTGGCGTATGAATATCTGCAGAATGGTAGTCTCTTCATGTTGCTCTATGGATCTCCAAGTGGAAACTCTTTTGACTGGAGGAGCAGGCTAAATGTTGCAGCTGTAGTAGCTGAGGCTTTGGCATATATGCATGAGGAGCTTCTTGAGAGTGGAATAGCACATGGTAACTTGAAATCAAGTAACATTTTGTTTGACAAGAATATGGATCCATGGATAAGCGAATATGGCCTAATGGTGGCAGAAAATCAAGACCAGTCTGTTATTTCTCACAACAAAAGCCTCAAAAACAAAAGCTTGACTGCAGCCACCTTCAAAGCTGATGTATATGCCTTTGGTGTGATGCTTCTCGAGCTGCTGACTGGGAAAGTAGTTAAAAATGATGGATTCGATTTAGTTAAATGGGCGAAATCAGTAGTTAGAGAGGAATGGACTGTGGAAGTTTTTGACAAGTTCCTAATCTCACAAGGTGCTTCTGAAGAGAGGATGATGAACTTGTTGCAGGTAGCACTAAAATGCGTCAGTTCTTCTCCTAACGATAGGCCAAGTATGAGTCAAGTTGCAGTGATGACAAATGCATTGAAAGAGGAAGAAGAAAAGTCCATATCCTTTGACACATGA 1980 0.4116 MKPKYRATSREGESKTAAAKMGVKPFSVFFIVIFLFFLMANSEKEEVRQGLVTFLDKLAPGNGQRDSMLGWNLISDPCTDKWHGVSCHSDNKSVKSIVLEKFSLSGVVDASSLCIVKSLQVLRLRNNGLHDLIPEDIRKCKSLTHLFLSGNKFSGDLPISIAELSNLKRLHVSDNYFTGQLPNMVCVSSLISFLAENNNFTGKIPDFDFSNLDAFNVSNNNLQGPVPDVGGKFNADSFSGNLNLCGKPLSNACPPSSSPSPSPSSSSSQPLEKKDRKSFGHGFPIYSGYIILGLVVLLFLSFKWVSKFKNKEEALEDEKKEMAQETSGDKPSETSNSNGSKNGIGIRSIRSEYSLTSLESGMTTSGLVVLTSRTLRGFQFEDLLSAPAELIRRGKHGSLYKVMLDNGVVLAVKRIKDWGISKQDFKRRMDLIAQVKHPRVMPPVAYYCSQQEKLLAYEYLQNGSLFMLLYGSPSGNSFDWRSRLNVAAVVAEALAYMHEELLESGIAHGNLKSSNILFDKNMDPWISEYGLMVAENQDQSVISHNKSLKNKSLTAATFKADVYAFGVMLLELLTGKVVKNDGFDLVKWAKSVVREEWTVEVFDKFLISQGASEERMMNLLQVALKCVSSSPNDRPSMSQVAVMTNALKEEEEKSISFDT 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2546g00002 659 PANTHER OS05G0588300 PROTEIN 28 649 - -
Gabi2546g00002 659 SUPERFAMILY L domain-like 75 234 - -
Gabi2546g00002 659 Gene3D Ribonuclease Inhibitor 208 253 IPR032675 -
Gabi2546g00002 659 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Gabi2546g00002 659 MobiDBLite consensus disorder prediction 328 344 - -
Gabi2546g00002 659 Gene3D Ribonuclease Inhibitor 45 207 IPR032675 -
Gabi2546g00002 659 Gene3D Phosphorylase Kinase; domain 1 357 459 - -
Gabi2546g00002 659 Pfam Protein kinase domain 391 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00002 659 MobiDBLite consensus disorder prediction 250 275 - -
Gabi2546g00002 659 ProSiteProfiles Protein kinase domain profile. 385 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2546g00002 659 SUPERFAMILY Protein kinase-like (PK-like) 389 643 IPR011009 -
Gabi2546g00002 659 Coils Coil 305 325 - -
Gabi2546g00002 659 Gene3D Transferase(Phosphotransferase) domain 1 460 658 - -
Gabi2546g00002 659 MobiDBLite consensus disorder prediction 315 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2546g00002 Gabi-Chr2546 33780 36062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2546g00002 71 640 Receptor kinase-like Gene Family AT1G48480 35.630 2.15e-97 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2546g00002 Pkinase 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2546g00002 - - gmx:100787974 937.947