Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2544g00028 ATGAGTTCAGTGTCCATTGATGCTTCCAGTGTGAGAGTCAGAGAACTGGGGCACTTTCATATCGAGGATACTGATCAAACAGAGAGGTCCCAGTGGATGCTGAATTCTCCCAATCCACCACCTCTATGGAAGAGGCTATTTCGTCCACTGAAAGACACCAAGTTCTTTTTTTCATCCAAGAAGAAAACTTGCCATGGAAATGCTGTTTCATTTTTGGGGAGTTTATTCCCTATCCTTAGCTGGCTCAGAAATTACAAAGCCTCCATGTTCAAAGATGATTTGCTAGCAGGTTTAACTCTTGCCAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTAGCAAGACTTGATCCTCAATATGGATTGTACACCAGTGTTGTTCCTCCTCTTATCTATGCTCTGATGGGGAGCTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTGTCATTGCTGCTATCCTCCCTTGTCCAGAAAGTGGTAGATCCTGCTGCTAATCCTGATGCCTACAGAAATGTTGTCTTTACAGTGACCTTATTTGCTGGAATCTTTCAAACTGCATTCGGAGTTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCCCTTGTAGGATTCATGGCAGGTGCAGCCATCATTATTGGTCTTCAGCAACTCAAGGGGTTGCTGGGGCTTACTCACTTTACCACCAAAACTGATGCAGTGTCGGTGTTGGAATCTGTTTATAAGTCACTCCATCATCAAATTACATCTGCAGAAAAGTGGTACCCTCTGAATTTTGTCATGGGGTGTTCATTCCTGATTTTCCTTTTAATTGCCCGATTTATTGGCAGAAAAAACAAAAAACTTTTCTGGTTGCCTGCTGTTGCTCCTCTTCTATCAGTTATATTATCAACTTTAATTGTGTATTTGTCCAAAGCTGATAAGAATGGGGTTAATATAATAAAGCATGTCAAAGGAGGCCTGAATCCAAGTTCGGCTCACCAGTTACAATTCCATGGTCAACATGTTGGACAAGCAGCTAAAATTGGATTGATTTCGGCCATCATTGCTCTTACTGAAGCAATAGCTGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGGAACAAAGAAATGTTAGCAATGGGCTGTATGAACATTGCAGGATCTTTCACTTCATGTTATGTGGCAACAGGTTCTTTCTCAAGGACTGCAGTGAATTTCAGTGCAGGATGTCAAACAGCAGTATCAAATATTGTGATGGCCGTTACTGTGCTTCTGTGTTTGGAATTGTTCACAAGGCTCTTATACTACACTCCTATGGCCATACTTGCTTCTATCATCCTCTCTGCACTTCCTGGATTAATTGACATACGTGAAGCTTGCTATATCTGGAAGGTTGACAAATTAGACTTCCTTGCCTGCATTGGTGCTTTCTTTGGTGTCTTGTTTGCATCGGTAGAGATTGGTCTTCTTGTTGCAGTGTCAATCTCGTTTGCAAAGATACTAATGCAATCAATTCGACCTGGAATAGAAGTACTAGGTAGAGTTCCAAGGACAGAGGCTTTCTGCGATGTTAGTCAATATCCAATGGCCATAAGCACTCCAGGAATCTTGGTTATTCGCATAAGCTCTGGCTCACTCTGCTTTGCTAATGCTAGTTTTGTTAGAGAAAGAATAGTGAAGTGGGTCACGGAAGAAGAAGATAGCCTTAAAGAAACTGACAAGGGAAGGGTCCAAGCAGTAATCTTGGACATGACAAACCTGATGAATGTTGATACTTCCGGAATTCTAGCACTGGAGGAACTGCACAAGAGGTTGCTTTCGTGTGAAGTAGAATTGGCATTGGTCAACCCGAGGTGGCTAGTAATTCACAAGCTTAAAGTGGCTCACTTCGTGGATAAAATCGGAAAAGAATGGGTTTTCCTTACTGTTGCGGAAGCCGTAGATGCATGTCTGTCTTCTAAATTCGCTGACCCATGA 1983 0.4221 MSSVSIDASSVRVRELGHFHIEDTDQTERSQWMLNSPNPPPLWKRLFRPLKDTKFFFSSKKKTCHGNAVSFLGSLFPILSWLRNYKASMFKDDLLAGLTLASLSIPQSIGYANLARLDPQYGLYTSVVPPLIYALMGSSREIAIGPVAVVSLLLSSLVQKVVDPAANPDAYRNVVFTVTLFAGIFQTAFGVFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGLTHFTTKTDAVSVLESVYKSLHHQITSAEKWYPLNFVMGCSFLIFLLIARFIGRKNKKLFWLPAVAPLLSVILSTLIVYLSKADKNGVNIIKHVKGGLNPSSAHQLQFHGQHVGQAAKIGLISAIIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSFTSCYVATGSFSRTAVNFSAGCQTAVSNIVMAVTVLLCLELFTRLLYYTPMAILASIILSALPGLIDIREACYIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVSISFAKILMQSIRPGIEVLGRVPRTEAFCDVSQYPMAISTPGILVIRISSGSLCFANASFVRERIVKWVTEEEDSLKETDKGRVQAVILDMTNLMNVDTSGILALEELHKRLLSCEVELALVNPRWLVIHKLKVAHFVDKIGKEWVFLTVAEAVDACLSSKFADP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2544g00028 660 Gene3D STAS domain 508 655 IPR036513 -
Gabi2544g00028 660 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271|GO:0008272
Gabi2544g00028 660 FunFam Sulfate transporter 31 508 655 - -
Gabi2544g00028 660 CDD STAS_SulP_like_sulfate_transporter 529 645 - -
Gabi2544g00028 660 PANTHER SULFATE TRANSPORTER 58 653 IPR001902 GO:0016020|GO:0055085
Gabi2544g00028 660 Pfam Sulfate permease family 90 476 IPR011547 GO:0016020
Gabi2544g00028 660 Pfam STAS domain 529 648 IPR002645 -
Gabi2544g00028 660 SUPERFAMILY SpoIIaa-like 535 652 IPR036513 -
Gabi2544g00028 660 ProSiteProfiles STAS domain profile. 545 652 IPR002645 -
Gabi2544g00028 660 NCBIfam sulfate permease 77 648 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2544g00028 Gabi-Chr2544 251337 255651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2544g00028 25 656 Inorganic Solute Cotransporters AT5G10180 65.884 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2544g00028 K17469 - gmx:100805269 1098.96