Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2544g00016 ATGGACATATATGAGCCATTCCAGCAACTTATGTGGGAGGACAGCTTTAAAGTCGATACTGGCCTGAATTCAATTGCTTCCCCAATGTTACTGGTTAACACTAGCATGGAGAACAAGTCTGAATATATTCCTCATGAATCAAGGGAGACTTCTGGAGACGATCAAGAGACTACAAATAAAGATGTTAGTAAGGTGCGAAGACGCCTAGCTCAGAATCGAGAGGCTGCTAAGAGAAGTAGGCTGAGGAAAAAGGCTTATGTTCAACAATTAGAAACAAGCCGTTTGAAGCTCATGCAATTGGAGCTGGAGATTGGGAAAGCAAGAAAGCAGGCTCTGTACATAGGCAGTGCATTAGATGGCAGTTATATGGGACCATCTGGAACAATAAACCCAGGGATTGTTGCGTTTGAAATTGAATATGGACATTGGGTTCAAGAGCAACATAAGTGGAATGAAGAACTTAGAAATGCATTTCAAACTAATGCAACTGATGTACAGCTCCATCTACTTGTTCAAAGTGTCTTGAACCATTACTCAAATCTTTTCAGAATGAAAGCAGATGCTGCAAAAGCAGATGTCCTCTATTTAATCTCTGGTGTGTGGAAAGCATCAGTTGAGCGCATTTTCCTTTGGATTGGAGGATCCCGCCCCTCACAGCTTCTTAACATCATAGTTCCTCAACTTGAGCCTTTGACTGATCAACAAATTGTTAGTATAAACAACCTGCGCCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACAAGGATTGGATAAACTCCAGCAGAGTCTGATCAATGACATGGCAGTTGATCCATTGGGTGCAGGAGTCTTTGGATTTCAGATGGCTGTTGCCATGGAGAAATTTGAGGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGGCAACAAACTCTGCTGCACATGTCACGCATCCTGTCAACAAACCAAGCTGCTCAGAGCTTGCTGGTTCTGGGGGAATACTTTCACCGTCTTCATACTCTTAGTTCTCTTTGGGCTGCTCGTCCTTGTGATCCTGCTTTGCCTCCCAAACTTTAG 1062 0.4322 MDIYEPFQQLMWEDSFKVDTGLNSIASPMLLVNTSMENKSEYIPHESRETSGDDQETTNKDVSKVRRRLAQNREAAKRSRLRKKAYVQQLETSRLKLMQLELEIGKARKQALYIGSALDGSYMGPSGTINPGIVAFEIEYGHWVQEQHKWNEELRNAFQTNATDVQLHLLVQSVLNHYSNLFRMKADAAKADVLYLISGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVSINNLRLSSQQAEDALSQGLDKLQQSLINDMAVDPLGAGVFGFQMAVAMEKFEALEGFVNQADHLRQQTLLHMSRILSTNQAAQSLLVLGEYFHRLHTLSSLWAARPCDPALPPKL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2544g00016 353 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Gabi2544g00016 353 MobiDBLite consensus disorder prediction 41 62 - -
Gabi2544g00016 353 FunFam BZIP family transcription factor 63 112 - -
Gabi2544g00016 353 SMART brlzneu 60 120 IPR004827 GO:0003700|GO:0006355
Gabi2544g00016 353 Pfam Seed dormancy control 152 225 IPR025422 GO:0006351|GO:0043565
Gabi2544g00016 353 Gene3D - 63 113 - -
Gabi2544g00016 353 ProSiteProfiles DOG1 domain profile. 133 343 IPR025422 GO:0006351|GO:0043565
Gabi2544g00016 353 Pfam bZIP transcription factor 64 92 IPR004827 GO:0003700|GO:0006355
Gabi2544g00016 353 Coils Coil 83 110 - -
Gabi2544g00016 353 SUPERFAMILY Leucine zipper domain 64 97 IPR046347 GO:0003700|GO:0006355
Gabi2544g00016 353 PANTHER TRANSCRIPTION FACTOR TGA9 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2544g00016 Gabi-Chr2544 106421 110290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2544g00016 1 344 Calmodulin-binding Proteins AT1G22070 54.696 1.42e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi2544g00016 DOG1 4.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2544g00016 K14431 - gmx:100794268 542.732