Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2544g00006 ATGACTGGCCAACTACCGCCGCAGCCTCGCCGTCTCGACCCCAAAATCTGGCGAGCATGCGCCGGCGCTTCCGTTCAAATCCCCACACTCCATTCTAGGGTTTACTACTTCCCTCAGGGTCATATCGACCAGGCTTCTTCACCTCCTAACAACCTTTCTCCTTTACTCCTCTCTAGGCCTTTCATTCTCTGCCGTATCTCCGCCGTCCAATTCCTCGCCGATTCAATCACCGATGAGGTTTTCGCTAAGCTCCTCCTCCACCCCCTCACTGATTACTCCGTCGCTCCTCCACGCCTACTTCCTCCTCCTCCTCCCTCCGACGATGACGACAAGGTCGTCTCGTTTGCCAAGATTCTTACTCCTTCTGACGCCAATAACGGCGGCGGATTTTCTGTACCGAGGTTCTGCGCTGATTCCATCTTCCCGCCGCTCGACTTCGACGCCGATCCGCCGGTGCAGAATCTCTCCGTCACCGACGTCCACGGCGTCGCGTGGGAGTTCCGCCACATTTACCGCGGCACGCCGCGGCGGCACTTGCTCACTACTGGCTGGAGCAAGTTTGTCAACAGCAAGAAGCTGGTTGCCGGCGATTCTGTGGTTTTCATGAAGAACCCCAGGAAGGAGATGTTCGTCGGGATTCGCCGTGCCACGCGATTCTCTTCCTGCGATGGTGCCAGATGGTCTTTTCAGGTTGGCGGGGTGAGAAATAGGGCTGAAGAGAAGCCTCAGGAAGAGGAAGTAAAGAAAGACGGGTTTTCGAGGAACGGGAAGGGGAAGCTGTCGGCGAAGGCGGTTGCGGAGGCAGCTGAATTGGCAGCACAAAACTTGCCGTTTGAGGTCGTGTATTATCCGAGGACTGGCTGGTCTGATTTTGTGGTGAAGGCTGAGATTGTGGACGAAGCAATGAGTGTTGTGTGGACTCCTGGAATGAGAGTCAAAATGGCTATGGAGACAGATGATTCATCCAGGATGACCTGGTTTCAGGGTACTGTGTCTTCGGTATCTGTTCCTGATAATGGCCATTGGCGAGGTTCTCCTTGGCGTATGCTTCAGGTTACATGGGACGAACCTGAAGTGTTGCAGAATGCAAAGTGGGTCAGCCCTTGGCAGGTTGAACTTGTTGCCGCCACACCTCCACTTCATACACCATTCCCCCCAACTAAAAAGTTTAGAGCTGCTCAGGGTCCCGTGGTGTTAACTGATGGAGAGGGAGACCCCTTTTCTATGACAGGATTCACTAATTCAACAATGAGACACTTGAATCAAACATTGTTGAGTTATGGTACTTTTCCTGCGGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAATTTTCCCAACTTTTCAGTTGATAACTCTCGTCTGTGTATGGGTAATTCCTTTGGGAACAACACAGTGCCAAGGCTGAAAAGTTTGTCAACAGATCTAAATGTTGGCAGTTTTCAATCTGATGACTTGTCACCAGATAGCCAACACAGTAGTTTGCATTCCTTTGGCACGGAATTTGTTAGGAACCACAGCTGCAACTCAACAAAATCTGGCTCTGTTTCATTTCAGCTATTTGGTGCAGTCATTCATGCAGAACAGCCTGTTGAAAGTGGTTCGCATGGTACTGGTTGCACAGAAGATGATAGCAGTAAGGGATGCAATGAAACTGAAGGCATTGACAACCCACTGGATGATTCTTTGACTTACTCAAAATTGCTTGACAGGCTTGATGATCAATGCCAAAGAGCCTCGACAGTCGAGGCATGTTATTTGTGA 1770 0.5079 MTGQLPPQPRRLDPKIWRACAGASVQIPTLHSRVYYFPQGHIDQASSPPNNLSPLLLSRPFILCRISAVQFLADSITDEVFAKLLLHPLTDYSVAPPRLLPPPPPSDDDDKVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLDFDADPPVQNLSVTDVHGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFMKNPRKEMFVGIRRATRFSSCDGARWSFQVGGVRNRAEEKPQEEEVKKDGFSRNGKGKLSAKAVAEAAELAAQNLPFEVVYYPRTGWSDFVVKAEIVDEAMSVVWTPGMRVKMAMETDDSSRMTWFQGTVSSVSVPDNGHWRGSPWRMLQVTWDEPEVLQNAKWVSPWQVELVAATPPLHTPFPPTKKFRAAQGPVVLTDGEGDPFSMTGFTNSTMRHLNQTLLSYGTFPAGMQGARHDLFSASNFPNFSVDNSRLCMGNSFGNNTVPRLKSLSTDLNVGSFQSDDLSPDSQHSSLHSFGTEFVRNHSCNSTKSGSVSFQLFGAVIHAEQPVESGSHGTGCTEDDSSKGCNETEGIDNPLDDSLTYSKLLDRLDDQCQRASTVEACYL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2544g00006 589 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Gabi2544g00006 589 Pfam Auxin response factor 268 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi2544g00006 589 SMART B3_2 115 217 IPR003340 GO:0003677
Gabi2544g00006 589 FunFam Auxin response factor 113 217 - -
Gabi2544g00006 589 SUPERFAMILY DNA-binding pseudobarrel domain 110 230 IPR015300 -
Gabi2544g00006 589 MobiDBLite consensus disorder prediction 533 557 - -
Gabi2544g00006 589 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Gabi2544g00006 589 CDD B3_DNA 114 215 IPR003340 GO:0003677
Gabi2544g00006 589 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 548 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi2544g00006 589 Gene3D - 306 378 - -
Gabi2544g00006 589 Gene3D - 112 217 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2544g00006 Gabi-Chr2544 33101 37551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2544g00006 10 555 B3 DNA Binding Superfamily AT1G77850 51.254 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi2544g00006 B3 7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2544g00006 - - qsa:O6P43_019702 850.892