Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2544g00001 ATGAGTTCAAAATATGATTTTCTGAAGGATGTTAATCCTGCCAAGGAGGACTGGAGGATTAAGGTGAAGGTGGTTCGGACTTGGAAAGTTCCTAACTTTCAGCGTAAAAATTTGGAGGACAATCTTGAAATGGGTGGTAGGATCCACGCCACTGTCAAAGACGTCATTGGTTTAATCTCAGGAATTGGGAAAGTTTGTGATCGTGTGGTTTCTGGTAGGAAGACAAAAATGGTGGTGTTGGAGCTTGACGACCTGAGTCTCTCGATTGATGGTGTGGAAAGTAGTACAAGAATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAAAAGTCTATCAGTGATGTGAAACTTTGTGTTGATGTAACTACCTGCATCACATACAGGACTATAAAGGCAATTGAGAGCAAATACAACTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGAATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTCTGTTTGATCGCGACTGTGTGTTTTTGTTGGGAATGGGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGAAAAGTCAATGTTGTTCAAGATAAATGTTAAGCAAAAGGATTTGAACACAAATAGTGAGCCCAAATATCAAGTTTCCAAAATTTGTATCAGCGAAGACATAATCTCAGCGTTCATTAAGTCTCTTATAGATCTAAATGATGAAGCAAATTTCGATAATGCACGCGAAAATGAAGTTGTTTCGTCGGAACTGGAAAAGGCTGCGGATGTTGAAAGTCAGACCTGTGACAGTGCTGACGTTAGTGATGTCTCTCTGACGATGTTGACACCTGTGCTCACTTCTCATGATTCCATTGCTGGAGAATTTAAATTTTCAGTTGTTCGGCCGACAAAGAAAATAAAGCTTGTAAAGGAGTTACGTACTGTG 1083 0.3952 MSSKYDFLKDVNPAKEDWRIKVKVVRTWKVPNFQRKNLEDNLEMGGRIHATVKDVIGLISGIGKVCDRVVSGRKTKMVVLELDDLSLSIDGVESSTRMTQLSTQSSYSFENDFLKETEKKSISDVKLCVDVTTCITYRTIKAIESKYNWWYKSCKKCPFSVYENFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSASFILFDRDCVFLLGMGAAELRELHFKRGADLDQFPNELNVLNEKSMLFKINVKQKDLNTNSEPKYQVSKICISEDIISAFIKSLIDLNDEANFDNARENEVVSSELEKAADVESQTCDSADVSDVSLTMLTPVLTSHDSIAGEFKFSVVRPTKKIKLVKELRTV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2544g00001 361 PANTHER OS03G0429900 PROTEIN 139 271 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2544g00001 361 Pfam Replication factor-A C terminal domain 139 267 IPR013955 -
Gabi2544g00001 361 CDD RPA1_DBD_C 134 287 IPR047192 -
Gabi2544g00001 361 Gene3D - 99 275 IPR012340 -
Gabi2544g00001 361 SUPERFAMILY Nucleic acid-binding proteins 134 268 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2544g00001 Gabi-Chr2544 582 3317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2544g00001 140 267 Core DNA Replication Machinery Family AT5G08020 27.132 2.80e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2544g00001 - - soe:110789971 149.828