Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2539g00004 | ATGCCAACTTTGATCTCAGCTAGGTTTCTTCTTGTTGTTGGAGAGTCATTCCCCATAAGAAGGGTTTTGGCCACTTCTAGGAATGCTTCATTGTGCAGTAGTGTCCGTTGTATGAGCCAGGTGGAACCACATAATGGTTCCCTCACCCTTTCTAGCATTGGTTTCCAAAGTGAAATTGAACCAAGAAACATAAGCAAACCAAATAAGCTTAAGCCATTAGGTTCTTCCTCTGAGGCTCTCAAGAGCAAAGGAAAGCCCTTTGGAAACAATGGGAAGAAACCAGTTAGGGTTATAGACAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCTAAATCATTTTCAGAACTTGGCCTTCCCAATGTGTTGATTGAGAGGCTAGAGAATGAGGGGTTCAATGTTCCAACTGAAGTTCAGTCTGCTGCTGTTCCTACCATTCTGAAGAACCATGATGTCATTATTCAGTCTTACACAGGTTCAGGGAAAACATTGGCTTATCTACTTCCTATACTTTCTGCTATTGGGCCATTAAGGGACAAAATTCCTGAAGGAAATGGTGATGGTGGTGAGGCTGGGAAGAAATTGGGGATAGAAGCAGTGGTTATTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAAATACTAGGAATGGATAATAAGAGAGCGGTTCAGCAGCTTGTGGGAGGTGCAAACCGAACCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACTCCTGGTAGGATATCAGAACTTAGTGCAGCTGGGAAACTGCGCACCCATGGATGTCGTTTTCTGGTATTAGATGAAGTTGATGAACTCCTATCCTTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCACGTAGGGAGGAGATCAGGTTCAGGTGCAGACCCAAACTCGAATGACAAAAGGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTGTGAACCACTTCTTGTCCAAGCTAAGAAAGTTGTCCCTCTTGAAACCGTTTCGCCTTCTCAGCCTGTTAATTTGTCAAGATCTTCACCCAGCTCGAGTCCTAACTCATCCATGCCATCTCAGACAGCAGCAGTAGATAGTCTACCTCCTGCATTGAAACACTATTACTGTGTAGCAAGGTTGCAGCACAAAGTTGATACTTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCATACTAGGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATAAAAGCCGTAGAGTTACATGGAGATCTTGGGAAGCTTGCTAGGTCAAATACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGATGACAAATGAATTATCAGCAAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCCACAGATTCAATTCACTATGCGCACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGTACAGTGGTAACCATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTTGGATTACCAATAGTATGTTGTAATTTTGCAGATGGAAAGATGCTTGTCACTGAAGAAGAGAAAACACTAAGCACTTCTTGA | 1686 | 0.4431 | MPTLISARFLLVVGESFPIRRVLATSRNASLCSSVRCMSQVEPHNGSLTLSSIGFQSEIEPRNISKPNKLKPLGSSSEALKSKGKPFGNNGKKPVRVIDKQQIESAPFAAKSFSELGLPNVLIERLENEGFNVPTEVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSAIGPLRDKIPEGNGDGGEAGKKLGIEAVVIAPSRELGMQIVREFEKILGMDNKRAVQQLVGGANRTRQEEALKKNKPAIVVGTPGRISELSAAGKLRTHGCRFLVLDEVDELLSFNFREDMHRILEHVGRRSGSGADPNSNDKRAERQLIMVSATVPFSVVRAARSWGCEPLLVQAKKVVPLETVSPSQPVNLSRSSPSSSPNSSMPSQTAAVDSLPPALKHYYCVARLQHKVDTLRRCIHALDAKFVIAFMNHTRQLKDVVFKLEARGIKAVELHGDLGKLARSNTLKKFKNGEVRVLMTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEEPEVFVVKKLQKQLGLPIVCCNFADGKMLVTEEEKTLSTS | 561 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2539g00004 | 561 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 142 | 345 | IPR014001 | - | |
| Gabi2539g00004 | 561 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 406 | 550 | IPR001650 | - | |
| Gabi2539g00004 | 561 | SMART | ultradead3 | 130 | 356 | IPR014001 | - | |
| Gabi2539g00004 | 561 | CDD | DEADc | 122 | 346 | - | - | |
| Gabi2539g00004 | 561 | MobiDBLite | consensus disorder prediction | 63 | 93 | - | - | |
| Gabi2539g00004 | 561 | Pfam | Helicase conserved C-terminal domain | 406 | 511 | IPR001650 | - | |
| Gabi2539g00004 | 561 | CDD | SF2_C_DEAD | 391 | 520 | - | - | |
| Gabi2539g00004 | 561 | MobiDBLite | consensus disorder prediction | 358 | 383 | - | - | |
| Gabi2539g00004 | 561 | Gene3D | - | 89 | 347 | IPR027417 | - | |
| Gabi2539g00004 | 561 | Pfam | DEAD/DEAH box helicase | 135 | 331 | IPR011545 | GO:0003676|GO:0005524 | |
| Gabi2539g00004 | 561 | Gene3D | - | 389 | 543 | IPR027417 | - | |
| Gabi2539g00004 | 561 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 111 | 139 | IPR014014 | GO:0003724 | |
| Gabi2539g00004 | 561 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL | 85 | 539 | - | - | |
| Gabi2539g00004 | 561 | SMART | helicmild6 | 430 | 511 | IPR001650 | - | |
| Gabi2539g00004 | 561 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 197 | 531 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2539g00004 | Gabi-Chr2539 | 12359 | 14769 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2539g00004 | 112 | 539 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 23.953 | 5.10e-41 | 151 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2539g00004 | - | - | gmx:100812968 | 910.598 |