Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2537g00019 ATGGAAGAGTGCAACACAGTGTTTGGCAAGTACGAAATGGGTAGGCTACTTGGGAAGGGTACTTTCGCCAAAGTGTATTACGGGAAGAAAATAGGCACGGGAGAAAGCGTTGCAATAAAAGTGATCAACAAAGAGCAAGTGAAGAAAGAAGGGATGATGGAGCAGATAAAGCGCGAGATATCAGTGATGCGTTTGGTGAAACACCCAAACATCGTTGAACTCAAAGAAGTTATGGCCACGAAAACGAAGATCTTCGTCGTCATGGAGTACGTCCGTGGCGGTGAGCTCTTCGCCAAGGTCTCCAAAGGCAAGCTCAAAGAAGATCTCGCCCGCAAGTACTTCCAACAATTAATCAGCGCCGTCGATTACTGCCACAGCAGAGGCGTCTCCCACCGCGACCTCAAGCCAGAGAATTTACTCCTCGACGAGAACGAAGACCTTAAAATCTCCGACTTCGGACTCTCCGCGTTGCCGGAACAGCTCCGTTACGACGGTCTCCTACACACCCAGTGTGGGACCCCTGCATACGTGGCACCGGAGGTGCTTCGGAAGAAAGGGTACGATGGTTCAAAGGCTGATATCTGGTCATGCGGGGTGATTCTCTATGTGTTGCTCGCTGGGTTTCTTCCTTTTCAAGATGAGAACCTCATGACTATGTATAACAAGGTTCTGCGAGCCGAATTCATGTTCCCACCTTGGTTTTCATCGGAATCAAGGAGATTGATTTCGAAGATTCTGGTGGGGGACCCACAGAGACGAATTTCGATTCCTGCGATTATGCGTTCCCCGTGGTTCCGAAAAGGGTTAACGGTACCGGCTCCGCCTTCTCAGTTAGAATTAGAAGAAGAGAAACCCGTTTCGGAGGAAGGTTCTAGAACGAAGGTTTCGTCGCCAAAGTTTTTCAACGCGTTCGAGTTCATCTCCTCGATGTCTTCAGGGTTCGATCTGTCTGGGTTGTTCGAGAGCAAGAGGAAGACTGGGTCGATTTTCACGTCAAAGAGTTCCGCTCCGGCGATCGTGTCGAAGATTTTGACGGCGGCGAAGGGGTTGAGTTTCAGGGTGGCGGAGGTGAAGGACTTCAAGATCAGGCTGCAAGGTCCGTCGGAGGGAAGGAAAGGGAGGCTGTCCGTCACGGCGGAGGTGTTCGAGGTGGCGCCGGAAGTCGCCGTCGTCGAGTTCTCAAAGTCCGCCGGCGACACCTTGGAGTATGCTAAGTTTTTTGAGGAAGATGTGAGGCCTGCGCTCAAAGACATTGTTTGGACTTGGCAAGGGGATAGTATGTGTAATGCTAACGTCGCCGTCTGTCACGGTGAAGGTGAAGAATGTCAGCCACAAATTATTACTGTGTGA 1350 0.5089 MEECNTVFGKYEMGRLLGKGTFAKVYYGKKIGTGESVAIKVINKEQVKKEGMMEQIKREISVMRLVKHPNIVELKEVMATKTKIFVVMEYVRGGELFAKVSKGKLKEDLARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKKGYDGSKADIWSCGVILYVLLAGFLPFQDENLMTMYNKVLRAEFMFPPWFSSESRRLISKILVGDPQRRISIPAIMRSPWFRKGLTVPAPPSQLELEEEKPVSEEGSRTKVSSPKFFNAFEFISSMSSGFDLSGLFESKRKTGSIFTSKSSAPAIVSKILTAAKGLSFRVAEVKDFKIRLQGPSEGRKGRLSVTAEVFEVAPEVAVVEFSKSAGDTLEYAKFFEEDVRPALKDIVWTWQGDSMCNANVAVCHGEGEECQPQIITV 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2537g00019 449 Gene3D Kinase associated domain 1, KA1 296 421 - -
Gabi2537g00019 449 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2537g00019 449 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2537g00019 449 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Gabi2537g00019 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 416 - -
Gabi2537g00019 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gabi2537g00019 449 SUPERFAMILY Protein kinase-like (PK-like) 7 284 IPR011009 -
Gabi2537g00019 449 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gabi2537g00019 449 FunFam Non-specific serine/threonine protein kinase 296 420 - -
Gabi2537g00019 449 CDD CIPK_C 302 416 - -
Gabi2537g00019 449 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2537g00019 449 CDD STKc_SnRK3 10 264 - -
Gabi2537g00019 449 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Gabi2537g00019 449 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Gabi2537g00019 449 FunFam Non-specific serine/threonine protein kinase 4 297 - -
Gabi2537g00019 449 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Gabi2537g00019 449 Pfam NAF domain 298 355 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2537g00019 Gabi-Chr2537 194419 196303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2537g00019 2 426 CBL-interacting serine-threonine protein kinases AT5G10930 72.727 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi2537g00019 Pkinase 1.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2537g00019 - - gmx:100817520 711.064