Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2537g00012 ATGGCAAAGTGTGAACTGAACAACGTTGGATCAATCGTTCTCGACCACCGCCACCCTGCCAAGAATGAAACCGCCGGCGGCGGCCACTTCCGTCTCTGGAATTCCCGCTCCGTCTCTTCGTTTCGCCGCATAATTATCGACGCCGTAAGCTGCGGCGGCACTTCTCGGCACCGGTGTCACCAGCGCCACAACAACGACGATGTCGTTAGCTCCGCCCCCTCGACGGCGAGCTTGTCCTCCGGGGAGAAGCAGCCAGTGCAAGAGGAGAGGTCGGAGAAGCTATCGGATCTTCTGAACGCAACGGAGTGTGAAACGGAGGGGGAAGCGAAGAAGAAGGAAGAGGCATTGACGGAGATGAAGCGAGTGGTGAAGGAGTTGCTGGGAGAGGACTTTTTGAAGCAGCGAATGGCAGCGGCGAGCGTGAGGCTACTGACGAAGGAAGGCTCGGAAGCGAGAGGGACATTCGCAATGCTTGGAGCAATTCCACCACTCGTTGGAATGCTTGATTTGGAAGACGTTCACTCTCAGATCGCATCGCTCTATGCGTTACTCAATCTCGGGATCGGAAACGATGCGAATAAAGCAGCTATTGTCAAAGTTGGTGCTGTTCACAAGATGCTCAAGCTCATTGAATCGCCGGATGTTGCAGATTCATCGGTATCTGAAGCAATTGTTGCCAACTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCTATAATTGGATCCTCGGGTGCAATACCATTCCTAGTTAGAACCCTTCAAAATTTATATGATAATAAAAGTAGCTCCCAAGTCAAACAAGATGCTCTCCGAGCGCTGTATAATCTTTCAATCTTTCAGACCAACATTTCATTCGTTTTGGAAACTGAGTTGGTCTCATTTCTGATAAAAGCAATAGGAGACATGGAAGCAAGTGAAAGAATCCTCTCAATTCTAAGCAATTTGGTGTCAACTCCAGAGGGAAGAAAAGCTATCAGTGGTGTGAGGGATGCAATCCCAATTCTGGTGGATGTATTGAATTGGACAGATTCCCCGGAATGCCAAGAGAAGGCATCATACATTTTGATGATTATGGCACACAAAGCCTATGGTGACAAGCAAGCCATGATTGAGGCAGGGATTGTGTCGTCACTACTTGAGTTGACGCTTCTTGGTACTACTTTGGCACAGAAGAGGGCCTCAAGGATATTGGAATGTTTGAGGATAGACAAAGGGAAGCAGGTTTCGGGGAGATATGGTAAAAACTTAGGTGCAACTGTCTCTGCACCTATTTATGGAGGAGGCAAAGAGTATTTGGAGGAAGAGGAAGATATGATGAGTGAGGAAAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTGAAGAGGGCAAACTTTCGTCAAGAATTTGTTCCATCCGAGCATTTTACTTCACTGACTTCAAGTTCGACTTCAAAGAGCCTTCCATTTTAA 1479 0.4733 MAKCELNNVGSIVLDHRHPAKNETAGGGHFRLWNSRSVSSFRRIIIDAVSCGGTSRHRCHQRHNNDDVVSSAPSTASLSSGEKQPVQEERSEKLSDLLNATECETEGEAKKKEEALTEMKRVVKELLGEDFLKQRMAAASVRLLTKEGSEARGTFAMLGAIPPLVGMLDLEDVHSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPDVADSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLQNLYDNKSSSQVKQDALRALYNLSIFQTNISFVLETELVSFLIKAIGDMEASERILSILSNLVSTPEGRKAISGVRDAIPILVDVLNWTDSPECQEKASYILMIMAHKAYGDKQAMIEAGIVSSLLELTLLGTTLAQKRASRILECLRIDKGKQVSGRYGKNLGATVSAPIYGGGKEYLEEEEDMMSEEKKAVKQLVQQSLQNNMMKIVKRANFRQEFVPSEHFTSLTSSSTSKSLPF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2537g00012 492 Coils Coil 433 453 - -
Gabi2537g00012 492 MobiDBLite consensus disorder prediction 66 84 - -
Gabi2537g00012 492 Coils Coil 109 129 - -
Gabi2537g00012 492 MobiDBLite consensus disorder prediction 54 94 - -
Gabi2537g00012 492 Gene3D - 83 260 IPR011989 -
Gabi2537g00012 492 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 492 - -
Gabi2537g00012 492 SMART arm_5 190 233 IPR000225 GO:0005515
Gabi2537g00012 492 SMART arm_5 280 318 IPR000225 GO:0005515
Gabi2537g00012 492 SMART arm_5 148 188 IPR000225 GO:0005515
Gabi2537g00012 492 SMART arm_5 319 361 IPR000225 GO:0005515
Gabi2537g00012 492 SMART arm_5 234 279 IPR000225 GO:0005515
Gabi2537g00012 492 SUPERFAMILY ARM repeat 118 404 IPR016024 -
Gabi2537g00012 492 Gene3D - 261 412 IPR011989 -
Gabi2537g00012 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 278 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2537g00012 Gabi-Chr2537 86237 88154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2537g00012 134 399 U-box Gene Family AT3G46510 36.531 1.49e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2537g00012 - - gmx:100818576 613.994