Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2537g00004 ATGAGTAGCTTGGTCGAGAGGCTTCGTGTAAGATCTGATCGTAAGCCAATTTATAATATTGATGACTCGGATGATGATGCTGATTTTTTGCCAAGAAAACCCGGGACAACTCAGGAAAAGTTAGAGAGGATTGATAGAAGTGATGCGAAAGAGAATTCATGTCAAGCCTGTGGAGAAAGTGGAAATCTTTTGAGCTGTGAAACTTGCACATATGCTTACCATCCTCGGTGTTTACTTCCACCACTTAAAGGTACCCCTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCCCTTAATGATATTGATAAGATATTAGATTGTGAGATGCGCCCTACTGTAGCCGCTGACAGTGATGCCACAAAATTGGGGTCAAAGCAAATTTTTGTCAAGCAATACCTTGTTAAGTGGAAAGGATTATCATATTTGCACTGCACATGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTTAAGATTCATCCTCGTCTAAGGACCAAAGTGAACAACTTCCATCGTCAAATGGCATCTTTCAATACTTCTGATGATGACTTTGTCGCCATTCGACCAGAATGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGATGATGATGAGAGGGAATATCTTGTGAAGTGGAAAGAGCTTCCATACGATGAATGCTACTGGGAATTTGAGTCAGATATTTCTGCATTTCTGCCAGAAATAGAAAGATTCAATAAATTTCGTTCTAGATCCAGCAAACCTTCTTCCAGTAAGCAAAAAAGCAGTATTAAGGATGATGCTGAATTGAAGAAACAGCAGAAAGAATTTCAACAGTATGAACATAGCCCGGAGTTTCTTTCTAATGGTACACTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTTTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACTATACAGAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGGTGTTTCTCCACATCTGGTAGTAGCTCCACTTTCAACATTGCGAAACTGGGAACGTGAATTCGCAACATGGGCACCACAAATGAATGTTCTTATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATAAGAGAGTATGAATTTTATTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAAATAGTTAGTGAAAGCAAGCAAGACAGGATTAAATTTGATGTCCTTTTGACATCATATGAAATGATCAACTTAGATACAGCATCATTGAAACCTATCAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAACAACTTGGACGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAAGAGGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTGACCCGTAATTATCAGATATTAACTCGCCGTGGTGGTGCACAGATTTCCCTTATCAATGTTGTAATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGAAATTGACGATGCAAACGAATCATTCAAACAGCTGGTGGAATCATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAACAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAAATGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATTCGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTCGCAACTGCTGACACAGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTGCAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGAAACTATTGAAGAAAGGATGATGCAGTTGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAATTGGATGACATCATAAGGTATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATCGATAGATTGCTGGACCGTGATCAAGTTGGAGTTGAAGAGGCTACTTTGGATGATGAAGATGAAAATGGATTTCTCAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGTTCAGGCTGCAGCTGAGGAGGCAGCACAAAAAAGAGCAATGGAGACTGTGAACAGTTCAGAAAGAACACATTTCTGGGAGGAGTTGTTAAAAGACAGGTTTCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAAGGGAAGCGAAACCGCAAGATGATGGTTTCTGTTGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTTACTGATGGTGATTCAAACTCAACTGGAACTGCTACTGCTAGAAGGCCTTCTAAGAAAAAACCACGTACAGATAGCACAGAGCCACTGCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTACTTGGATTCAATCAAAATCAGAGGGCTGCATTTGTACAAATTTTGATGAGGTTTGGGGTCGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAAAAGACTTGCGAAGAAATCAAAGATTACGGAAACCTTTTCTTGTCTCATATTGCTGAAGATATTACTGATTCCTCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTTCTTCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAATTCTCAAACTCCACTGTTTTCAGATGACATCCTATTACGCTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTAGTTTTGCTGCGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATCTGTAAGGAGTTGAATCTTCCCTTTATAAATTTACCAGTACCAGGACAAGTTGGCTCTCAGGCACAAAATGGTGCAAATTTGACAAATGCCGAAGTACCCAGCAATCAATCCGGGGAAAATGGTGGGAGTGACATAGCAGCTGATGGTGCACAAGGTTCTGGTGATGCTAGGAATCAAGCCCCGTTGTATCAAGATTCCTCCATATTATATCATTTTAGGGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAGTACTTTGGGGATCCAAAAGCAAATGAAGTAACAACTGAAGAACTTAAAAGCGAACCCAGGGCCACTAACTTTCCAAGTTATAAATTAGGAGACACTGACACCCAAATGATTGATCAACTGCCACAAGTAGAAGCTATAGCTAATGAAGAAATTTCGGTTGCTGCTTGTGATGATGATCCAAATCGATTGGAATTAGTTCGACTTTACAATGAGATGTGTAAGATAGTGGAGGAAAACCCCGTGGATTTAGTTCGAACATCTTTGGCAAGAGAACCGGCAGAGTTCAATGCGGTGAAGAATCTCCCTCTATTAGAAACAATTTGTGAAGATATCAACAGAATTCTAAAACCCACCCAAGAAGAACAGCCTATTGCAGAAATGCCAATATTGAATTCAGATATCAAATCAGAGGATATATCACACGATGAAGTTTTGGGCTCCAAATCGTTGCCTAACCCTCAAGATGACTGCAAACATGATAATTCAGCAGACAACGAGAGTAAAGATATGGTAATAGAATGTGAACCTAACAAAGAAAGCTGCTCAAGCCTTGTAAATGAGAAAAATGAAACTCCAAGTCTTCCGGTGAAAAAAGAAAGTGATACAGAAACGGATGAAAGTAAGAATGATGCTGAGTTGAATGAAAACACACAGAAATCTGATGCTGGGGTCATTGTATTGGATGATTAA 4341 0.4024 MSSLVERLRVRSDRKPIYNIDDSDDDADFLPRKPGTTQEKLERIDRSDAKENSCQACGESGNLLSCETCTYAYHPRCLLPPLKGTPPDNWRCPECVSPLNDIDKILDCEMRPTVAADSDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKIHPRLRTKVNNFHRQMASFNTSDDDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFLPEIERFNKFRSRSSKPSSSKQKSSIKDDAELKKQQKEFQQYEHSPEFLSNGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSPHLVVAPLSTLRNWEREFATWAPQMNVLMYVGSAQARAVIREYEFYFPKKQKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPEIDDANESFKQLVESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRETIEERMMQLTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGVEEATLDDEDENGFLKAFKVANFEYVDEVQAAAEEAAQKRAMETVNSSERTHFWEELLKDRFQEHKVEEFNALGKGKRNRKMMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTATARRPSKKKPRTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTCEEIKDYGNLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASENSQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICKELNLPFINLPVPGQVGSQAQNGANLTNAEVPSNQSGENGGSDIAADGAQGSGDARNQAPLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVTTEELKSEPRATNFPSYKLGDTDTQMIDQLPQVEAIANEEISVAACDDDPNRLELVRLYNEMCKIVEENPVDLVRTSLAREPAEFNAVKNLPLLETICEDINRILKPTQEEQPIAEMPILNSDIKSEDISHDEVLGSKSLPNPQDDCKHDNSADNESKDMVIECEPNKESCSSLVNEKNETPSLPVKKESDTETDESKNDAELNENTQKSDAGVIVLDD 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2537g00004 1446 SMART ultradead3 282 495 IPR014001 -
Gabi2537g00004 1446 CDD CD1_tandem 98 172 - -
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 902 953 - -
Gabi2537g00004 1446 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Gabi2537g00004 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 519 IPR027417 -
Gabi2537g00004 1446 Coils Coil 1444 1446 - -
Gabi2537g00004 1446 SMART chromo_7 99 167 IPR000953 -
Gabi2537g00004 1446 SMART chromo_7 190 244 IPR000953 -
Gabi2537g00004 1446 Pfam CHD subfamily II, SANT-like domain 933 1066 IPR009462 GO:0003677|GO:0006338
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 1409 1432 - -
Gabi2537g00004 1446 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Gabi2537g00004 1446 CDD SF2_C_SNF 607 733 - -
Gabi2537g00004 1446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 1143 1158 - -
Gabi2537g00004 1446 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 902 922 - -
Gabi2537g00004 1446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 97 IPR013083 -
Gabi2537g00004 1446 Gene3D - 1036 1213 - -
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 1361 1446 - -
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 17 39 - -
Gabi2537g00004 1446 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Gabi2537g00004 1446 Gene3D - 98 189 - -
Gabi2537g00004 1446 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Gabi2537g00004 1446 SMART PHD_3 53 96 IPR001965 -
Gabi2537g00004 1446 SMART DUF1087_2 839 905 IPR009463 -
Gabi2537g00004 1446 CDD CD2_tandem 190 241 - -
Gabi2537g00004 1446 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 1143 1174 - -
Gabi2537g00004 1446 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Gabi2537g00004 1446 Pfam Chromo (CHRromatin Organisation MOdifier) domain 116 156 IPR023780 -
Gabi2537g00004 1446 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 23 1424 - -
Gabi2537g00004 1446 Gene3D - 190 243 - -
Gabi2537g00004 1446 SMART DUF1086_2 910 1069 IPR009462 GO:0003677|GO:0006338
Gabi2537g00004 1446 Gene3D - 529 753 IPR027417 -
Gabi2537g00004 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Gabi2537g00004 1446 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Gabi2537g00004 1446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Gabi2537g00004 1446 Pfam PHD-finger 54 96 IPR019787 -
Gabi2537g00004 1446 Coils Coil 735 755 - -
Gabi2537g00004 1446 SMART helicmild6 638 722 IPR001650 -
Gabi2537g00004 1446 SUPERFAMILY Chromo domain-like 183 242 IPR016197 -
Gabi2537g00004 1446 Gene3D - 278 528 IPR038718 -
Gabi2537g00004 1446 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Gabi2537g00004 1446 MobiDBLite consensus disorder prediction 1370 1392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2537g00004 Gabi-Chr2537 31836 53597 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2537g00004 308 783 RAD5 or RAD16-like Gene Family AT1G02670 23.741 6.54e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2537g00004 SNF2_N 7.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2537g00004 K11643 - gmx:100790230 2545.77